Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4416 |
Symbol | |
ID | 8022104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | + |
Start bp | 1047402 |
End bp | 1048466 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644833190 |
Product | porin Gram-negative type |
Protein accession | YP_002984330 |
Protein GI | 241665971 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACAAGA CAATGATTGC CGCATTGGTG CTCGGAGCCA CGAGCCTGCC AGCGGCAGCG CAAACCACCG GCGGTGTCAC GCTCTACGGG CTGATCGACA CCACCATCCG CTACAGCACG CACGAAAACG CGGCAGGCAA CAGCAATCTG CAGATGATGG ACGGCGTGCT GACCGGTAGC CGCTGGGGCC TGCGTGGCAC CGAAGACCTG GGTGGCGGCA CCAAGGCCAT GTTCATCCTG GAATCGGGCT TCTTCCCCGA TACCGGCGGC AGCCAGCAGG GCGGGCGCCT GTTCGGACGC ACCGCGGTGG TGGGCCTGGA AGGCGACTAC GGCAAGCTCT ACCTCGGCCG GCAATACACG CTGGCGCATG AAGTGCTGTC TTCGTACGAA GCGATGGCGT TCGCCAACAA CTCCATCGTC GGCTATCAGG GCGGCAACTA CACCGGCCTG CGCTACGACA ACACGGTCAA GTACATCAAG TCGTTCGGCG GCCTGCAACT TGCCGGAGCA TGGACCTTTG GTGAAGCGGC AGGCAGCTTC AGCAAGAGTT CGGCCGGCGC CGGCTCGGTC GTCTACAGCA TGGGGTCGGC TGAAGTGGGC GCGGTGTATC AGGTCACGCG CGATGTGTCG TCGGCGTTCT TCGGCGCGGT GCCGGCGGCG CTTGCCAGCA AGCAGACGGT CTGGGGTTTT GGCGGCAAGC TGGATACCTC GATTGCCACG TGGTACCTCG GCTACACGAA CAGCCGCCTC GACGTGGCCG ACTACAAGAA CCAGGCCGCC TATGTGGGCG CAAAGGTGCC GATCTCCGGC GCACTGAGCT TCATCGGCAC CGTGCAGTAC GACTGGATGA AGCACCTCGA TTCCAGCGGC AAGCGCCTGA CCACCGCCGG CATGCTCGAC TACGCCTTCA GCAAGCGCAC CGATGTGTAT GCCGAGGTGG ACTACACGCA TCTGCAGGGG AGTTGGGTGG CGTTGGACAG CGCCGCCGCG TTCAACAACT CCGGCAACCT GTACGGCAAC AACTCGCGCT TGGGCGTGAT GCTGGGCGTG CGACACAAGT TCTGA
|
Protein sequence | MNKTMIAALV LGATSLPAAA QTTGGVTLYG LIDTTIRYST HENAAGNSNL QMMDGVLTGS RWGLRGTEDL GGGTKAMFIL ESGFFPDTGG SQQGGRLFGR TAVVGLEGDY GKLYLGRQYT LAHEVLSSYE AMAFANNSIV GYQGGNYTGL RYDNTVKYIK SFGGLQLAGA WTFGEAAGSF SKSSAGAGSV VYSMGSAEVG AVYQVTRDVS SAFFGAVPAA LASKQTVWGF GGKLDTSIAT WYLGYTNSRL DVADYKNQAA YVGAKVPISG ALSFIGTVQY DWMKHLDSSG KRLTTAGMLD YAFSKRTDVY AEVDYTHLQG SWVALDSAAA FNNSGNLYGN NSRLGVMLGV RHKF
|
| |