Gene Rpic12D_4416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4416 
Symbol 
ID8022104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp1047402 
End bp1048466 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content64% 
IMG OID644833190 
Productporin Gram-negative type 
Protein accessionYP_002984330 
Protein GI241665971 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAGA CAATGATTGC CGCATTGGTG CTCGGAGCCA CGAGCCTGCC AGCGGCAGCG 
CAAACCACCG GCGGTGTCAC GCTCTACGGG CTGATCGACA CCACCATCCG CTACAGCACG
CACGAAAACG CGGCAGGCAA CAGCAATCTG CAGATGATGG ACGGCGTGCT GACCGGTAGC
CGCTGGGGCC TGCGTGGCAC CGAAGACCTG GGTGGCGGCA CCAAGGCCAT GTTCATCCTG
GAATCGGGCT TCTTCCCCGA TACCGGCGGC AGCCAGCAGG GCGGGCGCCT GTTCGGACGC
ACCGCGGTGG TGGGCCTGGA AGGCGACTAC GGCAAGCTCT ACCTCGGCCG GCAATACACG
CTGGCGCATG AAGTGCTGTC TTCGTACGAA GCGATGGCGT TCGCCAACAA CTCCATCGTC
GGCTATCAGG GCGGCAACTA CACCGGCCTG CGCTACGACA ACACGGTCAA GTACATCAAG
TCGTTCGGCG GCCTGCAACT TGCCGGAGCA TGGACCTTTG GTGAAGCGGC AGGCAGCTTC
AGCAAGAGTT CGGCCGGCGC CGGCTCGGTC GTCTACAGCA TGGGGTCGGC TGAAGTGGGC
GCGGTGTATC AGGTCACGCG CGATGTGTCG TCGGCGTTCT TCGGCGCGGT GCCGGCGGCG
CTTGCCAGCA AGCAGACGGT CTGGGGTTTT GGCGGCAAGC TGGATACCTC GATTGCCACG
TGGTACCTCG GCTACACGAA CAGCCGCCTC GACGTGGCCG ACTACAAGAA CCAGGCCGCC
TATGTGGGCG CAAAGGTGCC GATCTCCGGC GCACTGAGCT TCATCGGCAC CGTGCAGTAC
GACTGGATGA AGCACCTCGA TTCCAGCGGC AAGCGCCTGA CCACCGCCGG CATGCTCGAC
TACGCCTTCA GCAAGCGCAC CGATGTGTAT GCCGAGGTGG ACTACACGCA TCTGCAGGGG
AGTTGGGTGG CGTTGGACAG CGCCGCCGCG TTCAACAACT CCGGCAACCT GTACGGCAAC
AACTCGCGCT TGGGCGTGAT GCTGGGCGTG CGACACAAGT TCTGA
 
Protein sequence
MNKTMIAALV LGATSLPAAA QTTGGVTLYG LIDTTIRYST HENAAGNSNL QMMDGVLTGS 
RWGLRGTEDL GGGTKAMFIL ESGFFPDTGG SQQGGRLFGR TAVVGLEGDY GKLYLGRQYT
LAHEVLSSYE AMAFANNSIV GYQGGNYTGL RYDNTVKYIK SFGGLQLAGA WTFGEAAGSF
SKSSAGAGSV VYSMGSAEVG AVYQVTRDVS SAFFGAVPAA LASKQTVWGF GGKLDTSIAT
WYLGYTNSRL DVADYKNQAA YVGAKVPISG ALSFIGTVQY DWMKHLDSSG KRLTTAGMLD
YAFSKRTDVY AEVDYTHLQG SWVALDSAAA FNNSGNLYGN NSRLGVMLGV RHKF