| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4334 |
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| Symbol | |
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| ID | 8022022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | - |
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| Start bp | 949979 |
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| End bp | 953185 |
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| Gene Length | 3207 bp |
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| Protein Length | 1068 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644833109 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_002984249 |
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| Protein GI | 241665890 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.26619 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.188133 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCT CTAAATTTTT CGTGGACCGC CCGATCTTTG CGGGCGTGCT TTCCACGCTG
ATCCTGCTGA TCGGGATCAT CTCGATCTGG CGATTGCCGA TCTCGGAGTA TCCCGAGGTC
GTGCCGCCTT CGGTGGTGGT GCGCGCGCAG TTCCCGGGCG CCAACCCGAA GGTGATTGCC
GAGACCGTCG CCTCGCCGCT CGAAGAGCAG ATCAACGGCG TCGAGAACAT GCTCTACATG
CAGTCGCAAG CCAACAGCGA CGGCAACCTG ACCACGACGG TCACCTTCAA GCTGGGCACC
GACCCGGACA AGGCACAGCA GCTCGTGCAG AACCGCGTGT CGCAGGCGCT GCCGCGTCTG
CCCGACGTGG TGCAGCGCCT GGGCGTGACC ACCGTCAAGA GCAGCCCCGA CCTGACGATG
GTGGTGCACT TGCTGTCGCC CAACGACCGC TACGACATGA CGTACCTGCG CAACTACGCC
GTGCTGAACG TCAAGGACCG CCTTGCACGG ATCAGCGGCG TGGGCCAGGT GCAGCTGTTC
GGCTCGGGTG ACTACTCGAT GCGCGTGTGG CTCGACCCGA ACAAGGTGGC CGAGCGCGGC
CTGACGGCCA ACGAAGTGGT CAAGGCCATC CGCGACCAGA ACGTGCAGGT GGCAGCCGGT
GTGATCGGCG GTTCGCCGTC GGTGCCGGGT ACGGACCTGC AACTGTCCGT CAACGCACAG
GGCCGCTTGA AGACCGAGCA GGAGTTCGGC GACATCATCC TCAAGAGTTC GCCCAACGGC
GCCGTCACCT ACCTGCGTGA CGTGGCCCGC ATCGAGCTGG CTGCGTCGGA ATACGGCCTG
CGTTCGCTGC TGGACAACAA GCAGGCGGTG GCCATTCCGA TCTTCCAGGC GCCGGGTTCC
AACGCGCTGC AGATTTCGGA TGACGTGCGC AAGACGATGG CCGAGCTGAA GGAAGACTTT
CCCGAAGGCG TCGACTACCG CATCGTCTAT GACCCGACGC AGTTCGTCCG CTCGAGCATC
GAAGCCGTCA CGCACACGCT GCTGGAAGCG GTGGCGCTTG TGGTGCTCGT GGTGATCCTG
TTCCTGCAGA CGTGGCGTGC GTCGATCATT CCGCTGCTGG CGGTGCCGGT GTCGATCATC
GGTACGTTTG GCCTGATGCT GATGTTCGGC TTCTCGATCA ACGCGCTGTC ATTGTTCGGG
CTGGTGCTGG CGATCGGGAT CGTGGTGGAC GATGCCATCG TGGTGGTGGA AAACGTCGAG
CGGAACATCG CCGAAGGGTT ATCGCCACGC GAGGCCACGT ACAAGGCCAT GCGCGAAGTG
AGCGGCCCGA TCATCGCCAT TGCCCTGACG CTGATTGCCG TGTTCGTGCC GCTGGCCTTC
ATGACGGGCC TGACCGGTCA GTTCTACAAG CAGTTCGCGC TGACGATCTC GATCTCGACC
GTCATCTCGG CCTTCAACTC GCTCACGCTG TCGCCCGCGC TGGCCGCCCT GCTGCTCAAG
AGCCACGACG CGCCGAAGGA TTGGCTGGCG CGTGCAATGG ACAAGGGCCT GGGCTGGATC
TTCCGTCCGT TCAACCGCGT GTTTGGTGCG GCGTCGGAAT CGTATGGCCG CAGCACGTCG
CGCGTGATCG GCCGCAAGGC CGTGATGCTG GGCATCTACC TGGCGTTGAT CGGAGCGACC
GCGCTGCTGT TCAACAAGGT GCCGGGCGGC TTCGTGCCGA TGCAGGACAA GCAGTACCTG
GTGAGCTTCG CGCAGTTGCC GGACGGTGCC TCGCTGGACC GCACGGAAGA CGTCATCCGC
CGCATGTCGG ACATCGCCCT CAAGCACCCC GGCGTGGAAA GCGCCGTGGC GTTCCCGGGC
CTGTCGATCA ACGGCTTCAC CAACAGCCCG AGCGCGGGCA TCGTGTTCGT CACACTCAAG
CCGTTTGACG AGCGCAAGAC CCCCAACCTG TCGGGCGGTG CCATCGCGGG GCAACTGAAC
CAGCAGTACG GTGCGATCAA GGACGCGTTC ATCGCTGTGT TCCCGCCGCC GCCGGTGCAA
GGCCTCGGCA CGGTGGGTGG CTTCAAGCTG CAACTGGAAG ACCGCGGCTC GGTCGGCTAC
GAACAGCTCT TTGCCGCCAC GCAGGCCTTC ATGGCGAAGG CACGCAAGAC GCCTGAGCTG
GGCCCGTCGT TCTCGAGTTA CCAGATCAAC GTGCCGCAGT TGAATGCAGA CCTTGACCGC
GTGAAGGCCA AGCAGCTTGG CGTGCCGGTG ACGGATGTGT TCGACACCAT GCAGGTGTAT
TTGGGCTCGC TGTACGTGAA CGACTTCAAC CGCTTCGGCC GCACGTATCA GGTGAAGGTG
CAGGCAGACG CGCCGTTCCG CGCGCATGCA GAAGACATCC TGCAATTGAA GACGCGCAAC
ACCGCGGGCG AGATGGTGCC GCTGTCTTCG CTGCTGCGCG TGTCGCAAGG CTTCGGGCCA
GACATGGTCG TGCGCTACAA CGGCTACACC GCTGCCGATA TCAACGGTGG CCCGGCCCCG
GGCTTCTCGT CGGGCCAGGC GCAGGCGGCC GTGGAACGCA TCGCGCATGA AACGCTGCCC
AAGGGCGTGC GCTTCGAGTG GACGGATCTG ACGTATCAGC AGATCCTGGC CGGCAACTCG
GCCGTGTGGA TCTTCCCGAT CTGCGTGCTG CTGGTGTTCC TGGTGCTCGC CGCGCAGTAC
GAAAGCCTGA CGCTGCCGCT GGCCGTGATC CTGATCGTGC CGATGAGCCT GTTTGCCGCC
ATGCTGGGCG TGTGGGTCTC GCATGGAGAC AACAACATCT TCACGCAGAT CGGTCTGGTG
GTGCTGGTGG GGCTGGCGTG CAAGAACGCC ATCCTGATCG TGGAGTTTGC GCGCGAGCTG
GAGCTGCAAG GACGCACCAT CGTGGAAGCC GCCATCGAGG CTTGCCGCCT GCGTCTGCGC
CCGATCCTGA TGACGTCGAT CGCTTTCATC ATGGGCGTGG TGCCCCTGGT GGTATCGACC
GGCGCCGGTG CGGAAATGCG TCATGCCATG GGCGTGGCCG TGTTCGCGGG GATGTTGGGT
GTGACGCTGT TCGGCCTGTT CCTCACGCCG GTGTTCTACG TGCTGCTGCG CACGCTGGCG
GCACGCCGCG GCCAGCGCTC GGAAGACGCC CCCGATCGTG ATCTGGACCT GGATGGCACG
CTGCCTGTGC CGTCGACCCA GCACTAA
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| Protein sequence | MNFSKFFVDR PIFAGVLSTL ILLIGIISIW RLPISEYPEV VPPSVVVRAQ FPGANPKVIA
ETVASPLEEQ INGVENMLYM QSQANSDGNL TTTVTFKLGT DPDKAQQLVQ NRVSQALPRL
PDVVQRLGVT TVKSSPDLTM VVHLLSPNDR YDMTYLRNYA VLNVKDRLAR ISGVGQVQLF
GSGDYSMRVW LDPNKVAERG LTANEVVKAI RDQNVQVAAG VIGGSPSVPG TDLQLSVNAQ
GRLKTEQEFG DIILKSSPNG AVTYLRDVAR IELAASEYGL RSLLDNKQAV AIPIFQAPGS
NALQISDDVR KTMAELKEDF PEGVDYRIVY DPTQFVRSSI EAVTHTLLEA VALVVLVVIL
FLQTWRASII PLLAVPVSII GTFGLMLMFG FSINALSLFG LVLAIGIVVD DAIVVVENVE
RNIAEGLSPR EATYKAMREV SGPIIAIALT LIAVFVPLAF MTGLTGQFYK QFALTISIST
VISAFNSLTL SPALAALLLK SHDAPKDWLA RAMDKGLGWI FRPFNRVFGA ASESYGRSTS
RVIGRKAVML GIYLALIGAT ALLFNKVPGG FVPMQDKQYL VSFAQLPDGA SLDRTEDVIR
RMSDIALKHP GVESAVAFPG LSINGFTNSP SAGIVFVTLK PFDERKTPNL SGGAIAGQLN
QQYGAIKDAF IAVFPPPPVQ GLGTVGGFKL QLEDRGSVGY EQLFAATQAF MAKARKTPEL
GPSFSSYQIN VPQLNADLDR VKAKQLGVPV TDVFDTMQVY LGSLYVNDFN RFGRTYQVKV
QADAPFRAHA EDILQLKTRN TAGEMVPLSS LLRVSQGFGP DMVVRYNGYT AADINGGPAP
GFSSGQAQAA VERIAHETLP KGVRFEWTDL TYQQILAGNS AVWIFPICVL LVFLVLAAQY
ESLTLPLAVI LIVPMSLFAA MLGVWVSHGD NNIFTQIGLV VLVGLACKNA ILIVEFAREL
ELQGRTIVEA AIEACRLRLR PILMTSIAFI MGVVPLVVST GAGAEMRHAM GVAVFAGMLG
VTLFGLFLTP VFYVLLRTLA ARRGQRSEDA PDRDLDLDGT LPVPSTQH
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