Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4293 |
Symbol | |
ID | 8021981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 897947 |
End bp | 899452 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644833068 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_002984208 |
Protein GI | 241665849 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAGAG GCACTCAAGC CCTCCGTACC TCGTTGCTCG CGCTGGCCGC GTGCGCACTC GTCTCCGCCT GCGCGGTCGG GCCCGATTAC AAGCGCCCCG ATGCCGAAGT GCCGCAGCAA TACAAGGAAG CCGGCGACTG GAAAGTCGCC GATCCGAGCG ACGCCATTGC CCGCGGCAAG TGGTGGGAGA TCTTCAACGA CCCGCAACTG AACGCGCTGG AAGAACAAGT GGCCGCCGCC AATCAGAACA TCCTGGTGGC CGAGGCGCAG TACCGCCAGG CCCAGGCGCT GGTGCAATCG GCACAGGCTT CGTTCTTCCC GACGCTGGGT GCCAATGCGT CAGCCACGCG CAGCCGTTCA GTGCGCACGT CGGTCAACCC GGATGGCAGC CTGTCGACCG GCAACCCAAG CCTGCTCAAT TCGCAGAGCC TGTCGCTCAA CGCCAGCTGG GAACTGGACC TGTGGGGCCG CATCCGCCGG ACGGTTGAGT CGAACAAGGC GAGCGCGCAA GCCAGCGCAG GCGACTTATC GTCCGCTTTG CTGTCGGCAC AGGCGACGCT TGCGCAGAAT TATTTTCAAT TGCGTGTCAC GGATACCCAG AAAGCCGTCT TGCAACGCAC GGTGGCGAAC TACGAGCGCT TCCTGAAACT CACGCAAAAC CAGTACGCCG TGGGCGTGGC GCAGCGTTCC GACGTGCTGA CCGCGCAGAC GCAACTCAAG CAGTCGCAGG CGCTGCTGCT GGATACCGAA GTCACGCGGG CGCAGCTTGA GCACGCCATT GCGGTGCTGA TCGGCAAACC GCCGGCGGAG TTCTCGCTGG CCCCAGCCAC TGCTGCGAGC GCCGCCGACC TGCCGGCCCT GCCTGCCATT CCGCTGGAAG TGCCATCAGC AGTGCTGGAG CGCCGTCCCG ACATCGCCGC CGCCGAGCGA CGCATGGCCG CTGTCAACGC GCAGATCGGC GTGGCCAAGG CCGCGTACTT CCCGACGCTT ACGCTGGGTG CCTCGGCCGG CCTGGCGGCC AACACGCTCA CGCGCCTGGC AACACTGCCC AGCCGCGTCT GGTCGATCGG CCCAACCCTG GCAGCGACGC TGTTTGATGG CGGCGCGCGT GCAGCCGCCG TCGACAAGGC CGGCGCTGCC TACGATGCGT CCGTCGCAAC GTACCGCCAG ACCGTGCTGG GGGCCTTCCA GGATGTCGAA GACAACCTGG CCGCGCTGCG CTGGCAAACG CAGGAATTTG GCGTACAGGC CGATGCCGTC AAGGCCGCGC AGGAAGCCGC GCAGCTCAAC CTGAACCGCT ATCGCGCGGG CACCGTGAGC TTCCTGGAAG TCATCACAGC ACAGGCCACG GCCTACAGCG CCGAGCGCAC GCTGCTCACG CTGCAGGGCA AGCAGTATTC GGCAGCGGTG CTGCTGGTGA AGGCGCTGGG CGGTGGCTGG CACGGCGAAG TACCGGTGGT CGGCAAGGCA GCGCTGCAGC CGGCATCCAC GCCAGCCGCG CAATAA
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Protein sequence | MTRGTQALRT SLLALAACAL VSACAVGPDY KRPDAEVPQQ YKEAGDWKVA DPSDAIARGK WWEIFNDPQL NALEEQVAAA NQNILVAEAQ YRQAQALVQS AQASFFPTLG ANASATRSRS VRTSVNPDGS LSTGNPSLLN SQSLSLNASW ELDLWGRIRR TVESNKASAQ ASAGDLSSAL LSAQATLAQN YFQLRVTDTQ KAVLQRTVAN YERFLKLTQN QYAVGVAQRS DVLTAQTQLK QSQALLLDTE VTRAQLEHAI AVLIGKPPAE FSLAPATAAS AADLPALPAI PLEVPSAVLE RRPDIAAAER RMAAVNAQIG VAKAAYFPTL TLGASAGLAA NTLTRLATLP SRVWSIGPTL AATLFDGGAR AAAVDKAGAA YDASVATYRQ TVLGAFQDVE DNLAALRWQT QEFGVQADAV KAAQEAAQLN LNRYRAGTVS FLEVITAQAT AYSAERTLLT LQGKQYSAAV LLVKALGGGW HGEVPVVGKA ALQPASTPAA Q
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