Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4093 |
Symbol | |
ID | 8021781 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 689307 |
End bp | 690800 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644832874 |
Product | long-chain-fatty-acid--CoA ligase |
Protein accession | YP_002984014 |
Protein GI | 241665655 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0327517 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.151728 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCCC ACCTGATCTT CGACGATCGC CCGACCGATG CCGAAACGCT GCTCGCGCGC GGTGCCGCCC TTGCCGGCGG TTTGCGCCGC ATGGGCGTGC AGGAGGGCGA CGTGATCGGC GTGCTGCTGC GCAATGCACC TGCCTACATC GACGTGATGC ACGCCTGCCG CATCGCAGGG TGCTACTTCT GCCCGATCAA CTGGCACTTC ACGCCGGCCG AGGTGGAGTT TCTGGTTCGC GATTCCGGTG CCAAGGTATT GATCGGCCAT CGCGACCTCG TCGATGCGGC AGAACCGCTG CTACCGGCCC ACGTGCAGCT GCTGCGCGTG GATGCAGAAG GCACCGACCG CGCCGACGGC TATGCCAACT GGCTTGCGCT GCAGACGCCG TACGACGGGC CGATCGTTTC TCCGCGCGGG CACATGGCCT ATACCTCGGG CACCACGGGG CGGCCCAAGG GCGTGGTACG CCAGGCCGTT CCGCTCGATC AGCTCGAAGC GCATCTGCAG AAGGCACGCG CCGTGGTGGC TGCAACATTC GGCATCGTGC CGGGCTGCCG TGCGCTGGTG CCTGCCCCGC TCTATCACAG CGCGCCGAGC CTCTTTGCCC AGCAAGCCGC CCAGATGGCG GAGGTGCTGG TGGTGAACGC GCGCTTTGAT GCCCTGCGCG TGCTGGAGCA GATCGAGCGC TACCGCATCG ACACGGTCTA CTTAGTGCCG ATCATGTATG TACGCCTGCT CAAGCTGACC GACGAAGAAC GCAGCCGCTA CGACCTGTCT TCGCTGCGCT TCGTGGCGTC CACGGGCGCA CCCTGCGCGC CGGAGATCAA GCGCCGCATG ATCGACTGGC TCGGCCCAGT CATCTACGAA ACGTATGCAT CGAGCGAGAC CGGCATGATC ACGGTGATGG ACCCGCGCGA CGCAGCCGCC CGCCCCGGCA GCGCCGGCCG CCCGGTGTGC GACGCACGCG TGCGCATCCT GCGTGAAGAC GGCACGCCCT GCCCCACCGG AGAGATCGGC CTGATCTACA GCCACCAACC CGCCTATCCC GATTTCACCT ACCGCGGCAA CGACGAAGCA CGCAGCAAGA TCGAGCGCGA CGGCCTGGTC ACGCTCGGCG ACATGGGCTA CCTCGACGCG GACGGCTACC TGTACGTGTG CGACCGCGCG TCGGACATGG TCATCTCGGG CGGCGTCAAC ATCTACCCGG CCGAGATCGA ACATGCGCTG CTGCGCCACC CCGATGTGGT CGACTGCGCC GTCTTCGGCG TGCCATGCGA TGAATACGGC GAACGCCTTG TCGCGGTGGT GCAGACCGAA CGCCAAGACC TGCAGGCCGA GCCCTTGATC GAATGGCTGC GCGGTCAGAT TGCCGGCTTC AAGATCCCGC GCCAGATCGA GTTCACCACA GCGCTGCCGC GCGACGACAA CGGCAAGATC GCCAAGCGCC GGCTGCGCGA TGCATGGTGG AGCGACCGGC AGCGGCGCGT ATAA
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Protein sequence | MTAHLIFDDR PTDAETLLAR GAALAGGLRR MGVQEGDVIG VLLRNAPAYI DVMHACRIAG CYFCPINWHF TPAEVEFLVR DSGAKVLIGH RDLVDAAEPL LPAHVQLLRV DAEGTDRADG YANWLALQTP YDGPIVSPRG HMAYTSGTTG RPKGVVRQAV PLDQLEAHLQ KARAVVAATF GIVPGCRALV PAPLYHSAPS LFAQQAAQMA EVLVVNARFD ALRVLEQIER YRIDTVYLVP IMYVRLLKLT DEERSRYDLS SLRFVASTGA PCAPEIKRRM IDWLGPVIYE TYASSETGMI TVMDPRDAAA RPGSAGRPVC DARVRILRED GTPCPTGEIG LIYSHQPAYP DFTYRGNDEA RSKIERDGLV TLGDMGYLDA DGYLYVCDRA SDMVISGGVN IYPAEIEHAL LRHPDVVDCA VFGVPCDEYG ERLVAVVQTE RQDLQAEPLI EWLRGQIAGF KIPRQIEFTT ALPRDDNGKI AKRRLRDAWW SDRQRRV
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