| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4086 |
|---|
| Symbol | |
|---|
| ID | 8021774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | + |
|---|
| Start bp | 679791 |
|---|
| End bp | 680924 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644832867 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_002984007 |
|---|
| Protein GI | 241665648 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.303595 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.349393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGACT TCTATACCGA AGAGCAGCGG ATGATCCACG ACGCTGCGCG CGCCTTTGCC
ACCGAACGCC TGGCGCCCAA CGCCGCGCAG TGGGACCGTG ACGGCGCCTT ACCCGACGAG
GTGGTGCGCG AGATGGGCGA GCTGGGCCTG CTGGGCATGA TCGTGCCGGC GGAGTGGGGC
GGTTCGTACA CCGACTACGT GGCCTATGCG CTTGCGCTGG AAGAGGTGGC TGCCGGGTGC
GCTGCCAGCG CGACGATGAT GAGCGTGCAC AACTCGGTGG GCTGCGGCCC CATCCTCAAG
TTCGGCACCG AGGCGCAGAA GGCGCGTTAC CTGCCGGACC TGGCCACGGG CCGCGCGATT
GGCGCGTTCT GCCTGACCGA GCCGCACGCC GGCTCCGAAG CCAACAACCT GCGCACCCGT
GCGGTACTGC GCGACGGCAA GTGGGTGCTC ACCGGCAACA AGCAGTTCGT CACCAACGGC
GCACGCGCGG ACATCGCCAT CGTCTTTGCC GTGACGGACC CTGAGGCGGG CAAGCGCGGC
ATCTCGGCCT TCATCGTGCC GACGGACACG CCGGGCTTTC ACGTCGGGCG TCCCGAACAC
AAGCTCGGCA TTCGCGCATC GGACACCTGC CCGATCACCC TGGAAGACTG CGCCGTGCCC
GAAGAGAACC TGCTGGGTGA GCGTGGCGAG GGCCTGAAGA TCGCATTGTC GAACCTGGAA
GGCGGACGCA TCGGCATTGC TGCGCAAGCC GTGGGCATTG CGCGCGCCGC GTTCGATGCG
GCGCGCAACT ACGCGAATGA GCGCATTCAG TTCGGCAAGG CGCTGCGCGA GCACCAGACC
ATCGCCAACA TGCTGGCCGA CATGGCCACG CGCCTGAATG CGGCGCGCCT GCTCGTTCAC
CACGCAGCGC GCCTGCGCAG TGCAGACAAG CCGTGCCTGT CGGAGGCCTC GCAGGCCAAG
CTCTACGCGT CGGAACTGGC GGAAGAGATC TGCTCCAACG CCATCCAGAT TCACGGCGGC
TATGGCTACT TGGCCGACTA CGCCGTCGAG CGCCACTACC GCGATGCACG CATCACCCAG
ATCTACGAAG GCACCAGCGA AGTCCAGCGG ATGGTGATCG CGCGGCACGT GTAG
|
|---|
| Protein sequence | MDDFYTEEQR MIHDAARAFA TERLAPNAAQ WDRDGALPDE VVREMGELGL LGMIVPAEWG
GSYTDYVAYA LALEEVAAGC AASATMMSVH NSVGCGPILK FGTEAQKARY LPDLATGRAI
GAFCLTEPHA GSEANNLRTR AVLRDGKWVL TGNKQFVTNG ARADIAIVFA VTDPEAGKRG
ISAFIVPTDT PGFHVGRPEH KLGIRASDTC PITLEDCAVP EENLLGERGE GLKIALSNLE
GGRIGIAAQA VGIARAAFDA ARNYANERIQ FGKALREHQT IANMLADMAT RLNAARLLVH
HAARLRSADK PCLSEASQAK LYASELAEEI CSNAIQIHGG YGYLADYAVE RHYRDARITQ
IYEGTSEVQR MVIARHV
|
|---|
| |