| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3563 |
|---|
| Symbol | |
|---|
| ID | 8021250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 106598 |
|---|
| End bp | 107974 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644832354 |
|---|
| Product | aromatic hydrocarbon degradation membrane protein |
|---|
| Protein accession | YP_002983495 |
|---|
| Protein GI | 241665136 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2067] Long-chain fatty acid transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.811834 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.361655 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGGCA ACTACGTTCG CGCGGCCACG GCCATCTGCG TTGCGATCTG TGGAACCCAC
GCCAGGGCGA CCGACGTGTT CAATCTGGAG GGCTTTGGTC CGGTCTCGCG CGCCATGGGC
GGAACGGGCG CGGCCTTCGA TATCGGGCCG GCAGCCATGA TGGAGAATCC CGCGACACTT
GGCCTGATGG GCGAGGGCCG CCACTTCAGC CTCGGCCTCG ATGTTGTGTC GACCGACATC
AAGGTCACGA ACACGGCAAC CGGCGAGACC GCGAGTTCGG GCAATCATGG CAACAACAAC
GGCCCGTACT TTGCACCGCA GACCGCATTC GTCTACCGGC AGGGACGTTA CGCCTTTGGC
GCCGGCATCT TCGCGGAAGG CGGGCTGGGG ACGCAATACG GTGGCAGCAG CTTTCTTTCG
CGTACGTCCA ACGGCGTGGA CACCGGCCTG GATCAGTTCT CCAGGCTGCT GGTGCTGCGC
GTGCCGTTCT CGGCCGCATA CCACGTCACC GACAAGCTGA CGGTGGGCGC TTCGGTTGAC
GCAGTCTGGA CCTCGCTCAA CCTGGGGACG CTGCTCGATG TCTCGCAGAT CGGCACGCTG
GCCGGCCAGG GACGCGTGTC TGGGACGCTT GTCCCGACCT TGCTGGGCGT GCCCGGGCTC
TCAGGCGGCT CTATCGACTT CTCCCGCAAT GCGCCCGTTG GAGGCGGCGC GCAGGCCTGG
GGTATCGGCG GCCGGCTGGG TCTGACGTAT CAGGTGACGC CCGATACCCG CATCGGGGCG
GCGTATCAGG CGAAGACGCA CGTGGGTGAC CTCACGGGTC AGGCCACGCT TTCCGCCGTC
AGTTCGGTCG CCGGCAACAT CCCGCTCAAG GGCGACGTGA CGGTTCGAAA CTTCCAGATG
CCCGCGCAGC TGACGGTCGG CATCAGTCAT CAATTCAACG ATCAACTGTC GGTGTCAGCT
GACTACCAGC GCGTGTTCTG GTCCAGCGTG ATGAAGGACA TGACCGTCGG ATTCGTGCAG
TCGGGCTCGG GGGCCAATCT GGATCTGTCG CTGCCGCAGA ACTACCGCGA CATCAGCGTG
TTCGGGATCG GCGCCGAGTA TCGCTACAAC GCAAAGTGGA CGTTCCGTGG CGGGTTCCAT
TACGCGCAGG AGGCGATCCC CGGCAACATG CTTTTGGCCG TGGTGCCCGC CACGCCCACG
ACGAGCCTGA CCGGCGGCGT TTCCTATGCA ATCGGCAAGA ACGATGTGAT CGACTTTGCG
CTGTCGGTGG CGCTGCGCAA GACGTTGGAC AATGCAAGCC AGCCCAATAC GGCGGTGCCG
ATCAGCGTGA CGCACTCGCA AGTGAACGCC GTGATCGCCT ATCAGAAGCG CTTCTAG
|
|---|
| Protein sequence | MKGNYVRAAT AICVAICGTH ARATDVFNLE GFGPVSRAMG GTGAAFDIGP AAMMENPATL
GLMGEGRHFS LGLDVVSTDI KVTNTATGET ASSGNHGNNN GPYFAPQTAF VYRQGRYAFG
AGIFAEGGLG TQYGGSSFLS RTSNGVDTGL DQFSRLLVLR VPFSAAYHVT DKLTVGASVD
AVWTSLNLGT LLDVSQIGTL AGQGRVSGTL VPTLLGVPGL SGGSIDFSRN APVGGGAQAW
GIGGRLGLTY QVTPDTRIGA AYQAKTHVGD LTGQATLSAV SSVAGNIPLK GDVTVRNFQM
PAQLTVGISH QFNDQLSVSA DYQRVFWSSV MKDMTVGFVQ SGSGANLDLS LPQNYRDISV
FGIGAEYRYN AKWTFRGGFH YAQEAIPGNM LLAVVPATPT TSLTGGVSYA IGKNDVIDFA
LSVALRKTLD NASQPNTAVP ISVTHSQVNA VIAYQKRF
|
|---|
| |