| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3481 |
|---|
| Symbol | |
|---|
| ID | 8021167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 25044 |
|---|
| End bp | 27629 |
|---|
| Gene Length | 2586 bp |
|---|
| Protein Length | 861 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644832274 |
|---|
| Product | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase |
|---|
| Protein accession | YP_002983416 |
|---|
| Protein GI | 241665057 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1049] Aconitase B |
|---|
| TIGRFAM ID | [TIGR00117] aconitate hydratase 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.62532 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.249237 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAAA ACTTTCGTGC TCACGTGGCC GCTCGCGCCG CACTCGGTAT TCCTCCCCTG
CCGCTGACGG CCCAGCAGAC TGCCGAACTG GTGGAGCTGC TCGTGAATCC GCCCGCGGGC
GAAGAGCAGA CGCTGCTCGA CCTGATCACC CATCGCGTGC CGGCCGGCGT GGACGAAGCC
GCGCGCGTGA AGGCAGGCTT CCTGGCTGCC GTGGCCAAGG GCGAGACGGC CTGCGCCCTG
ATCTCGCGTC AGCGCGCCAC CGAACTGCTC GGCACGATGC TGGGCGGCTA CAACATCCAG
CCGCTGATCG AGCTGCTGTC CGATGCAGCC GTCGGCGCCG TGGCGGCCGA TGCTCTCAAG
AAAACCCTGC TGATGTTCGA CCAGTTCCAC GACGTGAAGG AACTGGCCGA GAAAGGTAAC
GCCAACGCCA AGGCCGTGCT GCAGAGCTGG GCTGACGCCG AATGGTTCAC GAGCCGCCCG
GAAGTGCCGG AAAGCCTGAC CATCACCGTG TTCAAGGTCA CGGGCGAAAC CAACACCGAC
GACCTGTCGC CGGCCCCGGA CGCCACCACC CGCCCGGACA TCCCGATGCA CGCGCTGGCG
ATGCTGAAGA ACGCACGCCC CGGCATCACG CCGGAAGAAG ACGGCAAGCG CGGTCCGGTC
AAGTTCATCG AATCGCTGAA GGAAAAGGGT CACCTGGTCG CCTACGTCGG CGACGTGGTC
GGCACGGGCT CCTCGCGCAA GTCGGCCACC AACTCGGTGC TGTGGTTCAC CGGTGAAGAC
ATTCCCTACG TTCCGAACAA GCGCTTCGGC GGCGTGTGCC TCGGCGGCAA GATCGCCCCG
ATCTTCTACA ACACGATGGA AGATGCCGGC GCGCTGCCGA TCGAACTCGA CGTGTCGCAA
ATGAACATGG GCGACGTGGT CGAACTGCGC CCGTACGAAG GCAAGGCGCT GAAGGACGGC
AAGGTCATCG CCGAATTCCA GGTCAAGTCG GACGTGCTGT TCGACGAAGT GCGCGCCGGC
GGCCGCATTC CGCTGATCAT CGGCCGTGGC CTGACCGCCA AGGCGCGTGA AGCGCTGGGC
CTCGCACCGT CGACGCTGTT CCGCCTGCCG CATCAGCCGG CCGACAGCGG CAAGGGCTTC
TCGCTCGCGC AGAAGATGGT CGGCCGCGCG TGCGGCCTGC CGGAAGGCCA GGGCGTGCGT
CCGGGCACGT ACTGCGAACC GAAGATGACC TCGGTCGGCT CGCAGGACAC CACCGGCCCG
ATGACCCGCG ACGAACTGAA GGATCTGGCT TGCCTGGGCT TCTCGGCCGA CCTCGTGATG
CAGTCGTTTT GCCACACCGC TGCGTATCCG AAGCCGGTGG ACGTGAAGAC GCACCAGACG
CTGCCGAACT TCATCAGCAC GCGCGGCGGT ATCGCGCTGC GCCCGGGCGA TGGCGTGATC
CACTCGTGGC TGAACCGCAT GCTGCTGCCC GACACCGTCG GCACCGGCGG CGACTCGCAC
ACGCGCTTCC CGATCGGCAT CAGCTTCCCG GCAGGCTCGG GCCTGGTCGC CTTCGCGGCC
GCCACCGGCA CGATGCCGCT GGACATGCCG GAATCGGTGC TGGTCCGCTT CAAGGGCAAG
ATGCAGCCGG GCGTCACGCT GCGTGACCTC GTCAACGCGA TTCCGCTGTA CGCGATCAAG
CAAGGCATGC TGACGGTCGC CAAGCAAGGC AAGAAGAACA TCTTCTCGGG CCGCATCCTC
GAAATCGAAG GCCTGCCTGA CCTGAAGGTC GAGCAAGCGT TCGAGCTGTC GGACGCCTCT
GCCGAGCGTT CGGCCGCCGG TTGTACGGTG CACCTGAACA AGGAACCGAT CATCGAATAC
CTGAACAGCA ACATCACGCT GCTCAAGTGG ATGATCGCGC AGGGCTACCA GGACGCGCGC
AGCCTTCAGC GCCGCATCAA GGCGATGGAG CAGTGGCTGG CCGACCCGCA ACTGCTGTCG
CCGGATGCCG ACGCCGAATA CGCGGCCGTC ATCGAGATCG ACCTGGCCGA CATCCATGAA
CCGATCGTTG CGTGCCCGAA CGATCCGGAC GACGTGAAGA CGCTGTCCGA CGTGGCCGGC
GCGACCATTG ACGAAGTGTT CATTGGTTCG TGCATGACCA ACATCGGTCA CTTCCGCGCC
GCGTCGAAGC TGCTGGAAGG CAAGCGTGAC ATTCCGGTGA AGCTGTGGGT GGCCCCGCCG
ACCAAGATGG ACCAGAAGCA ACTGACCGAA GAAGGCCACT ATGGCGTGTT CGGCACGGCC
GGTGCCCGCA CCGAAATGCC GGGCTGCTCG CTGTGCATGG GTAACCAGGC ACAGGTGCGC
GAAGGTGCGA CGGTCATGTC GACGTCGACC CGCAACTTCC CGAACCGTCT GGGCAAGAAC
ACGAATGTGT ATCTGGGTTC GGCGGAACTG GCGGCAATCT GCTCGCGTCT GGGCAAGATT
CCGACCAAGG AAGAGTACAT GGCCGACATG GGCGTGCTCA ACGCGAACGG CGACAAGATC
TACCAGTACA TGAACTTCGA CCAGATCCAG GATTTCAAGG AAGTGGCCGA CACTGTTCAG
ATGTGA
|
|---|
| Protein sequence | MLENFRAHVA ARAALGIPPL PLTAQQTAEL VELLVNPPAG EEQTLLDLIT HRVPAGVDEA
ARVKAGFLAA VAKGETACAL ISRQRATELL GTMLGGYNIQ PLIELLSDAA VGAVAADALK
KTLLMFDQFH DVKELAEKGN ANAKAVLQSW ADAEWFTSRP EVPESLTITV FKVTGETNTD
DLSPAPDATT RPDIPMHALA MLKNARPGIT PEEDGKRGPV KFIESLKEKG HLVAYVGDVV
GTGSSRKSAT NSVLWFTGED IPYVPNKRFG GVCLGGKIAP IFYNTMEDAG ALPIELDVSQ
MNMGDVVELR PYEGKALKDG KVIAEFQVKS DVLFDEVRAG GRIPLIIGRG LTAKAREALG
LAPSTLFRLP HQPADSGKGF SLAQKMVGRA CGLPEGQGVR PGTYCEPKMT SVGSQDTTGP
MTRDELKDLA CLGFSADLVM QSFCHTAAYP KPVDVKTHQT LPNFISTRGG IALRPGDGVI
HSWLNRMLLP DTVGTGGDSH TRFPIGISFP AGSGLVAFAA ATGTMPLDMP ESVLVRFKGK
MQPGVTLRDL VNAIPLYAIK QGMLTVAKQG KKNIFSGRIL EIEGLPDLKV EQAFELSDAS
AERSAAGCTV HLNKEPIIEY LNSNITLLKW MIAQGYQDAR SLQRRIKAME QWLADPQLLS
PDADAEYAAV IEIDLADIHE PIVACPNDPD DVKTLSDVAG ATIDEVFIGS CMTNIGHFRA
ASKLLEGKRD IPVKLWVAPP TKMDQKQLTE EGHYGVFGTA GARTEMPGCS LCMGNQAQVR
EGATVMSTST RNFPNRLGKN TNVYLGSAEL AAICSRLGKI PTKEEYMADM GVLNANGDKI
YQYMNFDQIQ DFKEVADTVQ M
|
|---|
| |