| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3472 |
|---|
| Symbol | |
|---|
| ID | 8021158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 15754 |
|---|
| End bp | 16893 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644832265 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002983407 |
|---|
| Protein GI | 241665048 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000321827 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.111591 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGAC AACGTATCTG GAAGGCCACG CTGGCCGTCG TGCTGGCTGG CATGCTGGGC
GCATGCGGCA AGGCAGCGCC CGACGGCAAG AAGGATCCGC ACGCCGCCAA GCCGGCGCTG
GCCGTCAACG TGGTGCATCT CGCGCAGCGG GTTTGGCCGC GCATCGCCAC TGCCAGCGGC
GCGGTCCAGC CCTGGCAGGA GGCCAGTGTC GGCGCAGAAG TGAACGGGCT GAAGCTGGCC
GAGGTGCTGG TCAACGTCGG GGACGTGGTC AAGCATGGGC AACTGCTTGC GCGCATGTCC
GATGACACCG TGCGAGCCGA CGTGGCCGCG CAGCGTGCGA GCCTGGCCGA AGCCGAGGCC
TCGGCCGCGC AGGCGGCCGG CGAGGCGCGG CGCGCGCATG AGCTCGACAA GAGCGGCGCC
ATCAGCCAGC AGGACCTGAT CCAGTACGAC ACCCAGGCCA AGACGGCTGC CGCCAAGCTT
GCCGCGGCGC GTGCGCAGTT CGACAGCCAG GAACTGCGCC TGCGCTACAC GCGCGTCGTG
GCACCCGACG ATGGGGTGAT CAGTGCGCGT TCGGCCACCG TGGGCGCGGT GGTGGCGTCG
GGCACAGAGC TGTTCAAGCT GATCCGCAAG AACCGGCTGG AGTGGCGCGC TGAAATGCAC
GGCGATGTGC TTGCGCGCAT CCGGCCAGGC CAGGCTGTCC GGGTGCGCCG GATGGACGGC
GGCGTTATCG ACGGCCGCGT GCGGCAGGTC GCCCCAACCG TGGACGCCAA CACGCGCAAT
GGCCTGGTCT ATGTCGATCT GCCGCCGGAG GCAGGCGCGG CGGGCGTGAA GGCCGGCATG
TATCTGTCCG GCGACGTGCT GCTGGGCGAT GCGCCGGCCA CGACACTGCC CGAGACTGCC
GTGTTCTCGC GCGATGGCTA CGACTACGCC ATGGTGGTGG GCCCGCAGGG GCGCGTACGC
CAGGCCAAGG TCGCGCTCGG CCGACGTCAG GATGGGCAGG TCGAGATCGT GCAGGGCATC
GGCCCGAATG ATGCGGTGGT CGCCAGCGGC GCTGCCTTCC TGACTGACGA CGACCTTGTC
CGCGTGGTCG GGGCGGGTGT CACGGCGTCG GCGTCCGCTG CGGCTGGAGC CAGACCATGA
|
|---|
| Protein sequence | MTGQRIWKAT LAVVLAGMLG ACGKAAPDGK KDPHAAKPAL AVNVVHLAQR VWPRIATASG
AVQPWQEASV GAEVNGLKLA EVLVNVGDVV KHGQLLARMS DDTVRADVAA QRASLAEAEA
SAAQAAGEAR RAHELDKSGA ISQQDLIQYD TQAKTAAAKL AAARAQFDSQ ELRLRYTRVV
APDDGVISAR SATVGAVVAS GTELFKLIRK NRLEWRAEMH GDVLARIRPG QAVRVRRMDG
GVIDGRVRQV APTVDANTRN GLVYVDLPPE AGAAGVKAGM YLSGDVLLGD APATTLPETA
VFSRDGYDYA MVVGPQGRVR QAKVALGRRQ DGQVEIVQGI GPNDAVVASG AAFLTDDDLV
RVVGAGVTAS ASAAAGARP
|
|---|
| |