| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3424 |
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| Symbol | |
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| ID | 8021109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 3618705 |
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| End bp | 3620249 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644832218 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002983360 |
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| Protein GI | 241665000 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAAAA CGATGACCTT TCGAACCCCC GCGCTGCTGC CGGCGCTCCT GCTGGCTGCC
GGCGTGTTGT CCGGCTGCTC GATGGCGCCC ACCTATGAGC GCCCGGATGC TCCGATAACG
AGCGCGTACC CGCAGGCACC GGCCGGCTAT GCCGTGCCGG CAGACTCCGC CAAGCCCGGC
GAGAACGCAC CCCGTGCGAC CGAACTGGGC TGGCGCGAGT TCTTCCCCGA TGCACGCCTG
CAAAAGCTGA TCGGCCTGGC GCTTGAGAAC AACCGTGACC TGCGCGTGGC CATGCTCAAC
GTCGAGGCCG CGCGTGCGCA GTACCGCCTG CAGATCGCCG ACCTGCTGCC GCCGGTCAAC
GCGTCTGCCA CGTACACGCG CAGCCATACG CCGCCGTCGA TTTCGACCAC CGGCGGCGAC
ATCTACAACA AGCAGTACCA GCTTGGCGTG GGTATCAGCA ACTACCAGGT GAACCTGTTC
AGCGTGGGCG ACGTCACGTC GTCTGCGCGT GCAAGTTATC TGGCGACGGA CGAAGGCCGG
CGTGCGGCGC AGATCAGCCT GATCTCGCAG GTGGCCAAGG CTTACCTGAA CGAGCGCGCC
TATGCCGAGC AGCTGGACCT GGCCCAGCAG ACCCTGAAGG GCCGCGAGGA CTACTACAAG
CTGGCCAAGC AGCGTTTTGA CGTTGGCGCT TCGTCGGCGC TGGATCTGCG TCAGACCGAG
ACGCTGGTGG AATCGGTGCG TGTGTCGGTG GCACAGCTGA CTCGCCAGTA CGCCCAGGCG
ACCAACGCCC TGGTGCTGCT GGTGGGCGCG CCGCTGCCGG CCGATCTGCC CGCGCCGACC
ACGGTGTCGT CGGAGAAGAT CGTGGCCGAC ATTCCGCCGG GTCTGCCGTC GGAGCTGCTG
GAGCAACGTC CGGACATCCG CCAGGCCGAG CAGAAGCTGA TTGCCGCCAA CGCCAACATT
GGCGTGGCGC GGGCAGCGTT CTTCCCGAGC ATCGGGCTGA CGTCCAACGT GGGCACGGCC
AGCGGCGCGC TGCATGACCT GTTCAAGAGC GGGACCCAGT TCTGGTCGTT CGTGCCGAAC
CTGACGCTGC CGATCTTCAA CTGGGGCACC AACATCTTCA ACCTGGACTT GACCAAGACC
AACCAGAAGA TTGCGGTTGC CAACTACGAG AAGACGATCC AGACCGCGTT CCGCGAAGTG
TCCGACGCCC TCGTGGCGCG CGGCACCCTG GAGGAGCAAG TGGCCGCGCA GAAGCGATTC
CGCGATGCCA CGGCGGATCG CCTGACGCTG TCTGATCAGC GCTATCGCAA TGGCGTGTCG
AGCTTCCTCG ATGTGCTCGA CGCGCAACGC GATCTGTTCA GCGCCGACCA GACGCTGGTG
CAGACGCGCT TGGCCCGCCT GACCAACGCC ATCGATCTGT ACACGGCGCT GGGCGGCGGG
TTGCAAGAGC GCAGCACCAC CGTGGCCGCA CAGCAGGCTC AGCCGACGGC CGCGCCGGGC
GTTGCGCCTG CCACGCCGGA TATGACGCCG CAGCAATCGA AGTAA
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| Protein sequence | MQKTMTFRTP ALLPALLLAA GVLSGCSMAP TYERPDAPIT SAYPQAPAGY AVPADSAKPG
ENAPRATELG WREFFPDARL QKLIGLALEN NRDLRVAMLN VEAARAQYRL QIADLLPPVN
ASATYTRSHT PPSISTTGGD IYNKQYQLGV GISNYQVNLF SVGDVTSSAR ASYLATDEGR
RAAQISLISQ VAKAYLNERA YAEQLDLAQQ TLKGREDYYK LAKQRFDVGA SSALDLRQTE
TLVESVRVSV AQLTRQYAQA TNALVLLVGA PLPADLPAPT TVSSEKIVAD IPPGLPSELL
EQRPDIRQAE QKLIAANANI GVARAAFFPS IGLTSNVGTA SGALHDLFKS GTQFWSFVPN
LTLPIFNWGT NIFNLDLTKT NQKIAVANYE KTIQTAFREV SDALVARGTL EEQVAAQKRF
RDATADRLTL SDQRYRNGVS SFLDVLDAQR DLFSADQTLV QTRLARLTNA IDLYTALGGG
LQERSTTVAA QQAQPTAAPG VAPATPDMTP QQSK
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