| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3399 |
|---|
| Symbol | |
|---|
| ID | 8021084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 3587858 |
|---|
| End bp | 3589360 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644832193 |
|---|
| Product | succinic semialdehyde dehydrogenase |
|---|
| Protein accession | YP_002983335 |
|---|
| Protein GI | 241664975 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.547981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCA CCGACTTGCC GAGCGCGCCG GTTACGCCGC CGATCGCGCT GAAAGACCCC
GGCCTGTGGC GCACGCAAGC GTTCGTCGCC GGCACCTGGG CCGATGCCGA TGACGGTGCC
ACGCGCGACG TGACCGATCC CGCCACCGGC CGCACCATCG GCACCGTGCC CGGCATGGGC
GCCGCCGAAA CGCGCCGCGC CATCGAAGCC GCACAGGTTG CGCAACGTGC CTGGCGCAAG
GTGAGCGCAC GTGATCGCGC CAAGATTCTG CGCAAGCTGG CCGATCTGAT GATGGAGCAG
CAGCAGGACC TTGCGGCCAT CCTCACGGCC GAGCAAGGCA AGCCGCTGCC GGAAGCCGCC
GGTGAAATCG CCTACGCCGC CTCGTTCATC GAATGGTTTG CGGAAGAAGC GCGCCGCATT
TACGGCGACA CGATTCCGTC GCCGCAGGGC GATCGCCGCA TCGTCGTGCA GAAGGAGCCG
ATCGGCGTAA GCGCGGCCAT CACGCCGTGG AATTTCCCCA TCGCGATGAT GACGCGCAAG
GTCGGCCCGG CGCTGGCCGC TGGTTGCTCG ATGGTGGTCA AGCCGGCGCT GGAGACCCCC
TACTCGGCCC TGGCGTTTGC TGAGTTGGCG GCGCGTGCCG GCGTGCCGGC AGGCTTGCTG
TCCATCGTCA CGGGCGATTC GCAGGCGATT GGTGGCGAAC TGACCTCCAA CCCTGTCGTG
CGCAAGCTCA GCTTCACGGG CTCGACGGCC GTGGGTCGTT TGCTGATGCG CCAGTGCGCC
GACGACATCA AGAAGCTCTC GCTCGAACTG GGCGGTAATG CGCCGTTCAT CGTGTTCGAC
GATGCCGACG TCGATGCAGC GGTGGAAGGC GCGATGATCG CCAAGTACCG TAACGCGGGC
CAGACCTGTG TCTGTGCGAA CCGCTTCTAT GTGCAGCGCG GCATCTACGA CACGTTTGCC
GCCAAGCTGG CCGACGCCGT GCGTGCGTTG CGCGTGGGCA ACGGTACGGA GCCCGGCGTG
CAGCAGGGGC CGCTGATCCA CATGCGCGCG ATGGACAAGG TGCAACAGCA TCTGGACGAC
GCCGTACGCC AAGGCGCCCG CGTGCTGGTG GGCGGCAAGC CGCATGCGTT GTCTGCGCAG
GGCGGCGCGT TTTTCGAGCC GACCGTCGTC GTCGACGCAA AGGCCGACAT GCTGGTCGCG
CATGAAGAAA CGTTCGGCCC GCTGGCTGCG CTCATTCCCT TCGATACGGA AGACGACGCC
GTAGCCGCTG CCAACGACAC CGAGTTCGGT CTCGCTGCGT ATTTCTACAC GCGCGATCTG
GGCCGCGCGT GGCGCGTTTC GGATGCGCTC GAGTCAGGCA TGGTTGGCGT CAATACGGGG
CTGATCTCGA CGGCCGAAGC GCCGTTTGGC GGCGTCAAGC AATCGGGGCT GGGCCGTGAA
GGGTCGAAGT ACGGCATCGA CGAGTACCTA GAGATCAAGT ACATCAACAT GGCCGGCCTC
TGA
|
|---|
| Protein sequence | MTRTDLPSAP VTPPIALKDP GLWRTQAFVA GTWADADDGA TRDVTDPATG RTIGTVPGMG
AAETRRAIEA AQVAQRAWRK VSARDRAKIL RKLADLMMEQ QQDLAAILTA EQGKPLPEAA
GEIAYAASFI EWFAEEARRI YGDTIPSPQG DRRIVVQKEP IGVSAAITPW NFPIAMMTRK
VGPALAAGCS MVVKPALETP YSALAFAELA ARAGVPAGLL SIVTGDSQAI GGELTSNPVV
RKLSFTGSTA VGRLLMRQCA DDIKKLSLEL GGNAPFIVFD DADVDAAVEG AMIAKYRNAG
QTCVCANRFY VQRGIYDTFA AKLADAVRAL RVGNGTEPGV QQGPLIHMRA MDKVQQHLDD
AVRQGARVLV GGKPHALSAQ GGAFFEPTVV VDAKADMLVA HEETFGPLAA LIPFDTEDDA
VAAANDTEFG LAAYFYTRDL GRAWRVSDAL ESGMVGVNTG LISTAEAPFG GVKQSGLGRE
GSKYGIDEYL EIKYINMAGL
|
|---|
| |