| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3395 |
|---|
| Symbol | |
|---|
| ID | 8021080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 3583302 |
|---|
| End bp | 3584147 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644832189 |
|---|
| Product | pyrimidine 5'-nucleotidase |
|---|
| Protein accession | YP_002983331 |
|---|
| Protein GI | 241664971 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01993] pyrimidine 5'-nucleotidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACCA CCCGGGCGGT GCGCGTGCGC CATGCTGCGC GCACCTTCCC GCGCGAGGTG
CCGGCGGGCT CCGCGCCCGC CCGGCAGCCG GTCTGGCTGT TCGACCTCGA CAACACCCTT
CACCACGCAT CGCACGCGAT CTTTCCACAG ATCAACCGGC TGATGACGGC ATACGTGGCC
CGCGTGCTTG GCACCGATGA CGCCACCGCC AGCCAGGTGC GCGTGGACTA TTGGCGCCGC
TACGGCGCCA CGATTCTGGG CATGGTGCGC CATCACGGCG TCGACCCCGA TGATTTCCTG
GCCGAGGCAC ACCGCTTTGA AGACCTGCGC GCCATGGTGC GCGCAGAGCG CGGCCTGGCC
CAACTGCTGC GCGCGCTGCC AGGGCGAAAG ATTTTGCTGA CGAACGCACC CGTCGCTTAC
GCGCGCGAGG TGTTGCGCCT CATTGGCCTG AAACGCGCAT TCCTGCGCGA AATTGCCGTC
GAGCACATGT GGGTGCACCG GCGCCTGCGC CCGAAACCCG ATCCGCTGAT GCTGCGCCGG
CTGCTTGCAC GCGAACGCAT TGCGCCATCG CGCGCCATCC TCGTCGAAGA CACGCTTTCT
CACCTCAAAC GCTATCGGCG ACTGGGGATC GGCACGGTCT GGGTGACGGG CTATCTGCGG
CGCGTGCAGC CCACTTCCGC TGCCGATGCA TTGCATCCAA TGCAAGCGGC AGCCGTGGGC
GCGCGTGCAA ATTCACCACA TCAACCGTCC GCCACACCGA TTTTGTTCGC CAACCGGCCC
GGCTATGTGG GCGTGAAAGT AAAATCGGTG CTTCAACTAA AACGAAGGCT TGTTCGACGC
GGCTAG
|
|---|
| Protein sequence | MRTTRAVRVR HAARTFPREV PAGSAPARQP VWLFDLDNTL HHASHAIFPQ INRLMTAYVA
RVLGTDDATA SQVRVDYWRR YGATILGMVR HHGVDPDDFL AEAHRFEDLR AMVRAERGLA
QLLRALPGRK ILLTNAPVAY AREVLRLIGL KRAFLREIAV EHMWVHRRLR PKPDPLMLRR
LLARERIAPS RAILVEDTLS HLKRYRRLGI GTVWVTGYLR RVQPTSAADA LHPMQAAAVG
ARANSPHQPS ATPILFANRP GYVGVKVKSV LQLKRRLVRR G
|
|---|
| |