Gene Rpic12D_3374 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3374 
SymbolxerC 
ID8021059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3563657 
End bp3564643 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content66% 
IMG OID644832168 
Productsite-specific tyrosine recombinase XerC 
Protein accessionYP_002983310 
Protein GI241664950 
COG category[L] Replication, recombination and repair 
COG ID[COG4973] Site-specific recombinase XerC 
TIGRFAM ID[TIGR02224] tyrosine recombinase XerC 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCAAT CTGCATCCGC CGATGACCAT GGCGCTCAAG CGCCGCATCC GCAGATTGCG 
GCGTACCTGG ACGCGCTGAG GTTCGAGCGG CAGCTCTCGC CGCATACGCT GGAGAGCTAC
ACCCGCGAGC TGGCCGTGCT GCAGCGCCTC GGTGCGCAGC ACGCCGCCAA TATCGACCTA
ACGCAGCTGC AGTCGCACCA CATTCGCCGC ATGATGGCGC AACTGCATGG CGACGGCTTG
TCGGGACGCA GCATTGCGCG GGCGCTGTCC GCGTGGCGCG GCTGGTTCAA ATGGATGGCG
CTGCGCGATG CCGCCGTCAC CGCCAACCCG GTCGATGGCG TACGCGCCCC GAAGAGCCCG
AAGCGACTGC CGAAAGCGTT GTCCGTCGAG CAGGCTGTCG CGCTGATGGA GCAACTGCCT
GGCGACGATC CCGAGACGGT GCGCGATCGC GCTGTCAACG AGTTGTTCTA TTCGTGTGGC
TTGCGGCTCT CCGAACTCGT CAGCCTGGAT ATGCGACACG TGAAGGCCGG CGCGTATGAA
TCGGCGAGCT GGCTCGACCT CGAGGCGCGC GAGGTGCAGG TGCTTGGTAA AGGCAGCAAG
CGGCGCACCG TGCCGGTGGG CACCAAGGCG GCGCAAGCGC TGGCTGCATG GCTGGCGGTG
CGCGCGCAGC TTGCCAAGCC AGACGCGGCA CCCGAAGACG CGCACGCGCT GTTTCTCTCG
CCGCGCGGCA AGCGGCTGGC GCAGCGGCAG ATTCAATTGC GCATGAAGCG CAACGCCATC
GCGGCGGGTG TTCCGGCGGA TGTGCACCCG CACGTGCTGC GGCATTCGTT TGCCACGCAC
ATGCTGCAGT CATCGGGCGA TTTGCGCGCG GTGCAGGAAC TGCTCGGCCA CGCCAGTATT
GCCAGCACGC AGGTTTATAC TTCGCTCGAT TTTCAGCACC TGGCCAAGAT CTACGATCAG
GCGCATCCCC GCGCAAAAAA GAAGTAG
 
Protein sequence
MPQSASADDH GAQAPHPQIA AYLDALRFER QLSPHTLESY TRELAVLQRL GAQHAANIDL 
TQLQSHHIRR MMAQLHGDGL SGRSIARALS AWRGWFKWMA LRDAAVTANP VDGVRAPKSP
KRLPKALSVE QAVALMEQLP GDDPETVRDR AVNELFYSCG LRLSELVSLD MRHVKAGAYE
SASWLDLEAR EVQVLGKGSK RRTVPVGTKA AQALAAWLAV RAQLAKPDAA PEDAHALFLS
PRGKRLAQRQ IQLRMKRNAI AAGVPADVHP HVLRHSFATH MLQSSGDLRA VQELLGHASI
ASTQVYTSLD FQHLAKIYDQ AHPRAKKK