| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3340 |
|---|
| Symbol | |
|---|
| ID | 8021024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 3522898 |
|---|
| End bp | 3523902 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644832133 |
|---|
| Product | NADH dehydrogenase |
|---|
| Protein accession | YP_002983276 |
|---|
| Protein GI | 241664916 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACCT CCAATTTGCT GATCTTTGGC GGTACCGGTT TTATCGGTTC GCAGTTGCTG
TCCCGGCTGG TGACGGAGAC GTTTTCCGCG CCCGGCCTTC CAGAGGGCCG GATGATCGTG
CCGACGCGCG ATCCCGAGTC GGCCCGCGCG CACAACCTCA CGCTGCTGCC GCGTGTCGAC
GTGATGGATG CCGACATCTA CGCCGACGAC GCGCTCGACG CGCTGTTCCT CGCGCTGACC
GAGCGCGGCG GCGAGCACTG CGCGGTCATC AACCTCGTCG GCGTACTGCA GGATGCGCGC
GACATGCCGT ACGGCCCGAA CTTCCAGCGC GTGCATGTCG ATCTGCCGCG CCGCATCGTG
GCCGCATGCC GACGCCATGG TGTGAACCGG CTGCTGCACA TGAGTGCGCT GGGCGCCGAT
CCGGCCGGCC CGTCGATGTA CCTGCGCAGC AAGGGCGATG GCGAACGCGT GGTCATGAAC
AGCGAGCTTG ACTGGACGGT GTTCCGCCCC TCGGTGGTGT TCGGCCCGCA GGACCACTTC
CTGAATCTGT TTGCGAGCAT GCAGCGCATG GCGCCGTTTG TGCCGCTGGC CTGTGCCGAT
GCGCGCTTCC AGCCTGTGTA CGTGGATGAC GTGGCAGCCG CGTTCATCAA CGCGCTCAAA
AAGCCGGCGA CGATCCGGCA CGCTTATCCG CTGGTGGGGC CACGCATCTA CACATTGGCG
GAACTGATGC GCTTTGCGGG GCGTGCCAGC GGCCACCCGC GCTGGATCGT GCCGCTTCCC
GAAGGGCTGG GCCGCATGCA GGCCGCGCTG CTCGAGCATT TGCCGGGCGC ACCGATCTCG
CGGGACAACC TCGACTCCAT GCGTGTGGAC AACGTCAGCA TGGAACCAGT CGCGCCGGAA
CTCGGCATCC ACCCGCTCGG CATGGAGGCC GTGATGCTGC CCGCCCTGGC CGGCTTTGGG
CCGGACCGCG GATTGCGTGC TGCACGTACG CGGGTCCATC GCTAG
|
|---|
| Protein sequence | MQTSNLLIFG GTGFIGSQLL SRLVTETFSA PGLPEGRMIV PTRDPESARA HNLTLLPRVD
VMDADIYADD ALDALFLALT ERGGEHCAVI NLVGVLQDAR DMPYGPNFQR VHVDLPRRIV
AACRRHGVNR LLHMSALGAD PAGPSMYLRS KGDGERVVMN SELDWTVFRP SVVFGPQDHF
LNLFASMQRM APFVPLACAD ARFQPVYVDD VAAAFINALK KPATIRHAYP LVGPRIYTLA
ELMRFAGRAS GHPRWIVPLP EGLGRMQAAL LEHLPGAPIS RDNLDSMRVD NVSMEPVAPE
LGIHPLGMEA VMLPALAGFG PDRGLRAART RVHR
|
|---|
| |