Gene Rpic12D_3289 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3289 
Symbol 
ID8020973 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3471490 
End bp3472947 
Gene Length1458 bp 
Protein Length485 aa 
Translation table11 
GC content68% 
IMG OID644832084 
Producttranscriptional regulator, GntR family with aminotransferase domain protein 
Protein accessionYP_002983227 
Protein GI241664867 
COG category[K] Transcription
[E] Amino acid transport and metabolism 
COG ID[COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGTCC ATTTGACGAT CCACGGCCGG CACGACCTTG CCGGCCAACT CTATCGACAA 
CTCCGCACCG CCATCCTCGA TGGTCGGCTC GTGCCGGGCG AGCGCCTGCC CTCCACGCGC
GACCTCGCGC TGCAGATCGG TGTGTCGCGC AAGACCACGC TCGACGTATT CGAGCGCCTC
ATTGCGGAAG GCTATCTACA GCCGCGCGCC GGCTCCGGCA CGTTTGTGGC CGAAGCCACC
GAAGGATTGC GCGCCCGCAC GCCGGCCGCC TCGCCTGCGG CGCAACTTGC GTCGCCCACG
CCCGCCGTAC GCACCTTCGA CACGCCCTGG AACAACATGC CCGCGGTGCT GCCCCTGCCG
CGCGCGAATC TCGTCTACGA CTTTGCGGGT GGCGTGACGG AGAAGCGCCA GTTTCCGTTC
GACGTGTGGC GCCGTTGTGT TGCGCATGCG CTGCGCCAGC AGGCACGCGG GCGTGGCGGC
TATCAGGACC CTGCGGGCGA CCAGGCGCTG CGCCTGGCCA TCTCGCGGTA TCTCGCATTC
AGCCGCGCGG TGGTGTGCGC TTGGGCCGAT ATTGTCGTCA CGCAGGGCGC GCAGCAGGCC
ATCGACCTGA TCGCTCGCGT GCTCGTGCGC CCCGGGGATA CGGTGGCGAT TGAAGACCCG
GGTTACCCGC CCGCGCGCAT TGCGCTGCAG GCCCTCGGTG CCAAGGTCGT GCCGGTGCCG
GTCGATGCGG AAGGCCTGGT CGTCGATGCG CTGCCCAAGC GCGCCAAGCT CGTCTACGTA
ACGCCGTCGC ACCAGTTTCC GCTGGGCATG CCGATGAGCC TGGCGCGCCG AGCGCAACTG
CTCGACTGGG CGCAGCGCCA TGACGCGCTG ATCATCGAAG ACGATTACGA CAGCGAATTC
CGCTTCGACG GCCGTCCGAT GGAATCGCTC AAGAGTCTGG ACGCTGCGGG TTGCGTCGCT
TATGTGGGTA CGTTTTCGAA GACGATCTTT CCGGAACTGC GGATCGGCTA TGTGGTGCCG
CCGGCCTCGC TGGTGACGCC GTTGCGGCAC GCCAAGCAGG TGGCCGACTG GCACACTGAA
TCGCTCATGC AGGCGGCGCT GGGCAAGTTC ATGCTCGACG GCGATTTCGC CAAGTACCTG
CGGCGCATGC ACAAGGAATA CGCGGCGCGC CGGGATGCGC TGCTGCGGCA TCTGCGGGGC
CCGCTGGCAC CGTGGCTGAC GCCCGTGCCG TCGGCGGCGG GCATTCACAT GGCAGCGCAG
GTGGGCCCAC CGTTGCCCGA GGCCGAGCTG GTGAAGCTGG CGGAAAGCGT GGGCGTCGGG
CTGTACGGCA CGGCCAGGAT GTATGTGGCG CGGCCGGCGC AACCCGGGCT GCTGATCGGC
TATGGCCACG TGAACGTTGC CGAGATCGAC GCGGGCCTCG GCAAGCTGGC GGAGGCGCTG
ACCAAGGTGG CTACCTGA
 
Protein sequence
MDVHLTIHGR HDLAGQLYRQ LRTAILDGRL VPGERLPSTR DLALQIGVSR KTTLDVFERL 
IAEGYLQPRA GSGTFVAEAT EGLRARTPAA SPAAQLASPT PAVRTFDTPW NNMPAVLPLP
RANLVYDFAG GVTEKRQFPF DVWRRCVAHA LRQQARGRGG YQDPAGDQAL RLAISRYLAF
SRAVVCAWAD IVVTQGAQQA IDLIARVLVR PGDTVAIEDP GYPPARIALQ ALGAKVVPVP
VDAEGLVVDA LPKRAKLVYV TPSHQFPLGM PMSLARRAQL LDWAQRHDAL IIEDDYDSEF
RFDGRPMESL KSLDAAGCVA YVGTFSKTIF PELRIGYVVP PASLVTPLRH AKQVADWHTE
SLMQAALGKF MLDGDFAKYL RRMHKEYAAR RDALLRHLRG PLAPWLTPVP SAAGIHMAAQ
VGPPLPEAEL VKLAESVGVG LYGTARMYVA RPAQPGLLIG YGHVNVAEID AGLGKLAEAL
TKVAT