| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3262 |
|---|
| Symbol | |
|---|
| ID | 8020946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 3441479 |
|---|
| End bp | 3443452 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644832057 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_002983200 |
|---|
| Protein GI | 241664840 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGCT TCGCCAAGAT GTGGCAGTTG CTGTTCGGCA AGCCATTGGA CCCGCTGGAC
CCGCGCACGC GACACGCCAT TGCCGTGACG CCGCTGCTGG CGTGGGTCGG CCTGGGTGCG
GATGGTCTCT CATCCTCCTG CTACGGCCCG GAAGAAGCCT TCCTGGCGCT GGGCCAGCAC
ACACCGCTTG CCTTGTTCCT TGCGTTGGCC ACCGCTGCCA CGGTGTTCAT CATCGCGCTG
GGCTACAACC AGGTCATCGA GCTGTTTCCC ACTGGCGGAG GCGGTTACCG CGTAGCCACG
GCGCTGCTCG GACCCCGGCC CGGGCTCGTA TCGGGCGCCG CACTCCTCGT CGACTACGTG
CTGACGGTTG CAACGTCGCT TGCCAGCGGC GTCGACGCAT TCTTCAGCCT GCTGCCCGTG
AGCGCGCAAG CATTCAAGCT GGGCACCGAG ATCGTGCTGG TTGTACTGAT GACCGGGCTC
AACTTTCGGG GCATGCGCGA ATCCATCCTC GTGCTGCTGC CCATCTTCAT CGGCTTCGTG
GTGCTGCATC TCGGTTTGAT CATCTATGGC GTCGCCGTAC ACGGCCAGCA CCTTGCGGCT
GTCGTGCCCG AGGCCGTCGG CGAGGCGCAT GGCATGTCGC AAGCCTTCGG GCCACTGGTG
ATGATCGGGC TGCTGATGCG CGCGTTCTCG ATGGGCGGCG GTACCTATAC CGGGCTGGAG
GCCGTCTCCA ACAACGTCAA CATGCTGGCC GAACCGCGTG TTCCGGCCGG CAAGCGGACC
ATGGTGTACA TGGCAACGTC GCTGGCCTTT ACGGCAGGCG GCATCATCCT GCTCTACATG
CTGTGGCAGG CCAAGCCGGT GGAAGGGCAA ACGCTCAACG CCGTGGTGTT CGGCAGCGTG
ATCGACCACA TGGGCCTGGA CTCCGCCTTC GCACGCAGTG CGCTGCTGGC CGCCGTGCTT
GCGTTCGAAG CCGGCCTGCT GCTGGTTGGC GCGCAAACCG GTTTCCTGGA TGGCCCCGCT
GTGCTGTCGA ACATGGCGCA GGACTCATGG GTGCCACGTC ATTTCCGTGA TCTGTCGACG
CGACTCGTGC GGCAGAACGG CATCATCGTG ATGGGTGTGG CCAGCGTCAT CATCCTGCTG
TGGACGCACG GCCAAGTGGC GGTATTGGTG GTGCTCTACA GCATCAACGT GTTCTTGACG
TTCAGCCTGT CATTGCTGGG CCTGTGCACC TATTGGTGGC GCCGCCGCCG CGATGGCGGC
AACTGGTACA CGCACTTCGG TCTGTCCGCG CTTGGGCTTT CGGTCACCAG CACGGTGCTC
GTCATTACGC TGGTCGAGAA ATTCATGGCC GGCGGTTGGT TGACCGTGGT CGTCACCAGC
GCGGTGGTCG CACTCTGCTT CCTGATCCGG CGGCATTACG ACGAAACGCG CGCACTGATC
GCCAAGGAAG ACGCCTTGTT TGCAGGCCAG CCTCCGGTAG TGGACCCAGC CACGGCGCCG
GCAACACCCG ACCCGTCGCA GCCGACCGCC ATCCTGCTGG TGGGCAAGCA TCGCGGCGCC
AGCATGCACG CGCTGCTCTG GGTCAACCGG CTGTTTCCGG GTCACTTCAA GAACGTCATC
TTCCTGGCCG TGGGCGAAGT GGATGCCCAG AGCTACGAGG GCGCGGAGCA CCTGGACCAC
CTGCGCCAGA CCATCGGCGC ATCGCTGGAG TACTACGTCG CGCATTGCCG GCGGCACGGC
ATGGCGGCCG ACTACCGCAT CGCCTTCGGC ACCCACCCGA TTGCCGAATT CACCCGACTG
GCCGAAACCA CGATGGACGC CTTTCCGAAC AGCGTCTGCT TTGCCAGCAA GCTGATCTTC
AAACAAGTCA ACTTCCTGAC CGCATGGCTG CATAACCAGA CGCCGCTCGA GATTCAGACA
CGCCTGCATG TGCAGGGCAA GCAGATGGTG CTGCTGCCGA TGAATGTGGG GTAG
|
|---|
| Protein sequence | MARFAKMWQL LFGKPLDPLD PRTRHAIAVT PLLAWVGLGA DGLSSSCYGP EEAFLALGQH
TPLALFLALA TAATVFIIAL GYNQVIELFP TGGGGYRVAT ALLGPRPGLV SGAALLVDYV
LTVATSLASG VDAFFSLLPV SAQAFKLGTE IVLVVLMTGL NFRGMRESIL VLLPIFIGFV
VLHLGLIIYG VAVHGQHLAA VVPEAVGEAH GMSQAFGPLV MIGLLMRAFS MGGGTYTGLE
AVSNNVNMLA EPRVPAGKRT MVYMATSLAF TAGGIILLYM LWQAKPVEGQ TLNAVVFGSV
IDHMGLDSAF ARSALLAAVL AFEAGLLLVG AQTGFLDGPA VLSNMAQDSW VPRHFRDLST
RLVRQNGIIV MGVASVIILL WTHGQVAVLV VLYSINVFLT FSLSLLGLCT YWWRRRRDGG
NWYTHFGLSA LGLSVTSTVL VITLVEKFMA GGWLTVVVTS AVVALCFLIR RHYDETRALI
AKEDALFAGQ PPVVDPATAP ATPDPSQPTA ILLVGKHRGA SMHALLWVNR LFPGHFKNVI
FLAVGEVDAQ SYEGAEHLDH LRQTIGASLE YYVAHCRRHG MAADYRIAFG THPIAEFTRL
AETTMDAFPN SVCFASKLIF KQVNFLTAWL HNQTPLEIQT RLHVQGKQMV LLPMNVG
|
|---|
| |