Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2967 |
Symbol | rpoB |
ID | 8020639 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 3122189 |
End bp | 3126295 |
Gene Length | 4107 bp |
Protein Length | 1368 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644831754 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_002982909 |
Protein GI | 241664549 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.194981 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.648216 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTACA GCTTTACCGA GAAAAAGCGT ATTCGCAAGA GTTTCGCGAA ACGCGCAACG GTTCATCAGG TTCCCTTCCT GCTTGCCACC CAGATTCAAT CGTATGCCCA GTTCTTGCAG GAGAACACTC CTGTTGCACA ACGCAAGAGC GAAGGTTTGC AAGCGGCGTT CAACGCCATT TTCCCCATCG TGTCGCACAA TGGTCTGGCA CGCATGGAGT TCGTGTCGTA CCACCTGTCC AACCCGCCGT TTGACGTCAA GGAATGTCAA CAGCGTGGTC TGACCTTCCA CTCGGCGCTG CGCGCAAAAG TGCGCTTGAT CATCAACGAC CGCGAGAATC CCACCAAGGT CAAGGAGATC AAGGAGCAGG AAGTCTACAT GGGCGAAATT CCGCTCATGA CCTCCACCGG TTCGTTCGTG ATCAACGGGA CGGAACGTGT GATCGTGTCC CAGCTGCATC GTTCGCCGGG CGTGTTCTTC GAGCACGACA AGGGCAAGAC GCACAGCTCG GGCAAGCTGC TGTTCTCGGC GCGGATCATT CCGTACCGCG GCTCGTGGCT CGATTTCGAA TTCGACCCGA AGGACATCCT GTACTTCCGC GTCGACCGCC GCCGCAAGAT GCCGGTGACG ATCCTGCTGA AGTCGATTGG CCTGACGCCG GAACAGATCC TGGCGCACTT CTTCGTGTTC GATAACTTCA CGCTGAAGAC CGAAGGCGCA CTGATGGAAT TCGTGCCCGA GCGTCTGCGC GGTGAAGTCG CTCGCTTCGA CATTTCCGAC AAGAACGGCA AGGTCGTGGT CGAGAAGGAC AAGCGCATCA ACGCCAAGCA CATCCGCGAC CTGGATTCCG CGGGCACCAA GCTGATCAGC GTGCCGGAAG ACTACCTGCT GGGCCGCGTG CTGGCGAAGA ACATCGTCGA TCCGGACACC GGTGAAGTCC TGGCCAACGC CAACGACGAA CTGACCGAAG GCGTGCTCGA GAAGCTGCGT GATGCCGGCG TGAAGGAAAT CCAGACGCTG TACACGAACG ACCTGGATCA GGGTCCGTAC ATGTCCGCGA CGCTGCGCAC GGACGACACG GCCGACCAGA CCGCCGCGCG TATCGCGATC TATCGCATGA TGCGCCCGGG CGAGCCGCCG ACCGAAGACG CCGTCGAAGC GCTGTTCCAA CGTCTGTTCT ACAGCGAAGA CTCGTACGAC CTGTCGCGCG TTGGCCGCAT GAAGGTCAAC AGCCGCCTGA ACCGCTCGAC CGGTACCGGC CCGATGGTGC TGACCGACGA GGACATCCTC GACACGATCA AGCTGCTGGT GAATCTGCGT AACGGCAAGG GCGAAGTGGA CGATATCGAC CACCTCGGCA ACCGTCGCGT GCGTTGCGTC GGCGAACTGG CGGAAAACCA GTTCCGCGCC GGTCTGTCGC GCGTTGAGCG TGCCGTGAAG GAACGTCTGG GTCAGGCCGA GACGGAAAAC CTGATGCCGC ACGACCTGAT CAACTCGAAG CCGATTTCGT CAGCGATCCG CGAGTTCTTC GGTTCGTCGC AGCTGTCGCA GTTCATGGAC CAGACCAACC CGCTGTCGGA AGTCACGCAC AAGCGTCGTA TTTCGGCACT GGGCCCGGGC GGTCTGACGC GCGAGCGTGC GGGCTTTGAA GTCCGTGACG TGCACCCGAC CCACTATGGC CGCGTGTGCC CGATCGAAAC GCCGGAAGGT CCGAACATTG GTCTGATCAA CTCGCTGGCG CTGTACGCAC AGCTGAACGA CTACGGCTTC CTCGAAACGC CGTACCGCAA GGTTGAAAAC GGCAAGCTGA CCGACCAGGT GGATTACCTG TCGGCCATCG AGGAAGGCAA GTACGTGGTG GCGCAGGCCA ACGCGACGCT TGACAAGGAC GGCAACCTGA TCGACGAGCT GGTTTCCGCG CGCGAAGGCA GCGAGCGTGA AACCCGTATG GTCACGCCGG ACCGCGTGCA GTACATCGAC GTGGCACCGT CGCAGATCGT GTCGGCTGCA GCTTCGCTGG TGCCGTTCCT CGAGCACGAT GATGCAAACC GTGCACTGAT GGGCGCGAAC ATGCAGCGTC AGGCCGTGCC TTGCCTGCGT GCAGACAAGC CGCTCGTGGG TACGGGCGTC GAGCGCACCG TGGCAGTGGA CTCGGGTACC GCCGTGCAGG CAACCCGTGG CGGCGTGGTC GACTATGTTG ACGCGAACCG CGTGGTGATC CGCGTGAATG ACGACGAAGC CGTGGCCGGT GAAGTCGGCG TGGACATCTA CAACCTGATC AAGTACACGC GTTCGAACCA GAACACGAAC ATCAACCAGC GTCCGATGGT CAAGGTGGGC GACATCGTTG CCCGCGGCGA CGTGATTGCT GACGGCGCCT CGACCGACAT GGGCGAGCTT GCGCTCGGCC AGAACATGCT GGTCGCGTTC ATGCCCTGGA ACGGCTACAA CTTCGAAGAT TCGATCCTGA TCTCGGAGCG CGTCGTGGCT GAAGACCGCT ACACCTCGAT CCACATCGAG GAACTGTCGG TCGTCGCCCG CGACACCAAG CTCGGACCGG AAGAAATCAC GCGCGACATC TCGAACCTGG CCGAAGCCCA ACTGGCTCGC CTGGACGAGT CGGGCATCAC GTACATCGGC GCGGAAGTGG AAGCCGGCGA CGTGCTGGTC GGCAAGGTCA CGCCCAAGGG CGAGACCCAG CTGACGCCGG AAGAAAAGCT GCTGCGTGCG ATCTTCGGTG AGAAGGCGTC CGACGTGAAG GACACCTCGC TGCGCGTGCC GTCGGGCATG AGCGGTACCG TGATCGACGT GCAGGTCTTC ACGCGTGAAG GCGTGGTGCG TGACAAGCGT GCCCAGTCGA TCATCGACGA AGAGCTGAAG CGCTATCGCC TGGACCTGAA CGACCAGCTG CGTATCGTGG AAGGCGATGC CTTCCAGCGT CTGGAGCGTC TGCTGGTGGG CAAGGTTGCC AACGGCGGCC CGAAGAAGCT GGCCAAGGGC ACCGCGCTCA CGAAGGAATA CCTGGGCGAT CTGGACAAGT GGCACTGGTT CGACATCCGC CCGGCAGAAG ACGAAGTCGC GCTGCAGCTG GAAGCCGTGA AGGTTGCCAT CGAGCAGAAG CGCCACGACT TCGACCTCGC GTTCGAAGAG AAGCGCAAGA AGCTCACGCA AGGCGACGAA CTGCCGCCGG GCGTGATCAA GATGGTCAAG GTGTATCTGG CCGTGAAGCG TCGCCTGCAG CCGGGCGACA AGATGGCCGG CCGTCACGGT AACAAGGGTG TTGTGTCGAA GATCACCCCG ATCGAAGACA TGCCGTACAT GGCCGACGGC ACACCTGCTG ACATCGTGCT GAACCCGCTG GGCGTGCCTT CGCGGATGAA CGTGGGTCAG ATTCTCGAAA CCCACCTGGG CTGGGCCGCG CGCGGTCTGG GCGAGCGCAT CGGCAACATG CTCAAGGCGC AAGCCAAGGC TGCCGAGATC CGCAAGCTGC TGGAGCAGAT CTACAACGAA AGCGGCAAGG TTGAAGATCT GGACAGCCTG TCCGACGCTG AAATCCTCGA GCTGGCCGAG AACCTGAAGA AGGGCGTGCC GTTCGCGACG CCGGTGTTCG ATGGTGCGCA TGAGGATGAA ATCCGCCGCA TGCTGGACCT CGCCTATCCG GAAGACATCG CGAAGGAGAA GGGTCTGACC GCTTCCAAGC AGCAGGTCAC GCTGTTCGAC GGTCGCACCG GTGAAGCCTT CGAGCGTCCG GTCACGCTGG GCGTGATGCA CATGCTGAAG CTGCACCACT TGGTCGACGA CAAGATGCAC GCGCGCTCGA CCGGTCCGTA CTCGCTGGTG ACGCAGCAGC CGCTGGGCGG TAAGGCCCAG TTCGGTGGCC AGCGTTTCGG TGAAATGGAA GTGTGGGCAC TCGAAGCGTA CGGCGCATCC TACGTGCTGC AGGAAATGCT GACCGTGAAG TCGGATGACG TGAACGGCCG GACCAAGGTG TACGAGAACA TCGTCAAGGG CGAGCACTCG ATCGATGCCG GCATGCCGGA ATCGTTCAAC GTGCTGGTGA AGGAAATCCG CTCGCTGGGT ATCGACATCG ACCTCGAGCG CAACTAA
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Protein sequence | MAYSFTEKKR IRKSFAKRAT VHQVPFLLAT QIQSYAQFLQ ENTPVAQRKS EGLQAAFNAI FPIVSHNGLA RMEFVSYHLS NPPFDVKECQ QRGLTFHSAL RAKVRLIIND RENPTKVKEI KEQEVYMGEI PLMTSTGSFV INGTERVIVS QLHRSPGVFF EHDKGKTHSS GKLLFSARII PYRGSWLDFE FDPKDILYFR VDRRRKMPVT ILLKSIGLTP EQILAHFFVF DNFTLKTEGA LMEFVPERLR GEVARFDISD KNGKVVVEKD KRINAKHIRD LDSAGTKLIS VPEDYLLGRV LAKNIVDPDT GEVLANANDE LTEGVLEKLR DAGVKEIQTL YTNDLDQGPY MSATLRTDDT ADQTAARIAI YRMMRPGEPP TEDAVEALFQ RLFYSEDSYD LSRVGRMKVN SRLNRSTGTG PMVLTDEDIL DTIKLLVNLR NGKGEVDDID HLGNRRVRCV GELAENQFRA GLSRVERAVK ERLGQAETEN LMPHDLINSK PISSAIREFF GSSQLSQFMD QTNPLSEVTH KRRISALGPG GLTRERAGFE VRDVHPTHYG RVCPIETPEG PNIGLINSLA LYAQLNDYGF LETPYRKVEN GKLTDQVDYL SAIEEGKYVV AQANATLDKD GNLIDELVSA REGSERETRM VTPDRVQYID VAPSQIVSAA ASLVPFLEHD DANRALMGAN MQRQAVPCLR ADKPLVGTGV ERTVAVDSGT AVQATRGGVV DYVDANRVVI RVNDDEAVAG EVGVDIYNLI KYTRSNQNTN INQRPMVKVG DIVARGDVIA DGASTDMGEL ALGQNMLVAF MPWNGYNFED SILISERVVA EDRYTSIHIE ELSVVARDTK LGPEEITRDI SNLAEAQLAR LDESGITYIG AEVEAGDVLV GKVTPKGETQ LTPEEKLLRA IFGEKASDVK DTSLRVPSGM SGTVIDVQVF TREGVVRDKR AQSIIDEELK RYRLDLNDQL RIVEGDAFQR LERLLVGKVA NGGPKKLAKG TALTKEYLGD LDKWHWFDIR PAEDEVALQL EAVKVAIEQK RHDFDLAFEE KRKKLTQGDE LPPGVIKMVK VYLAVKRRLQ PGDKMAGRHG NKGVVSKITP IEDMPYMADG TPADIVLNPL GVPSRMNVGQ ILETHLGWAA RGLGERIGNM LKAQAKAAEI RKLLEQIYNE SGKVEDLDSL SDAEILELAE NLKKGVPFAT PVFDGAHEDE IRRMLDLAYP EDIAKEKGLT ASKQQVTLFD GRTGEAFERP VTLGVMHMLK LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAS YVLQEMLTVK SDDVNGRTKV YENIVKGEHS IDAGMPESFN VLVKEIRSLG IDIDLERN
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