| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2967 |
|---|
| Symbol | rpoB |
|---|
| ID | 8020639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 3122189 |
|---|
| End bp | 3126295 |
|---|
| Gene Length | 4107 bp |
|---|
| Protein Length | 1368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644831754 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_002982909 |
|---|
| Protein GI | 241664549 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.194981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.648216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTACA GCTTTACCGA GAAAAAGCGT ATTCGCAAGA GTTTCGCGAA ACGCGCAACG
GTTCATCAGG TTCCCTTCCT GCTTGCCACC CAGATTCAAT CGTATGCCCA GTTCTTGCAG
GAGAACACTC CTGTTGCACA ACGCAAGAGC GAAGGTTTGC AAGCGGCGTT CAACGCCATT
TTCCCCATCG TGTCGCACAA TGGTCTGGCA CGCATGGAGT TCGTGTCGTA CCACCTGTCC
AACCCGCCGT TTGACGTCAA GGAATGTCAA CAGCGTGGTC TGACCTTCCA CTCGGCGCTG
CGCGCAAAAG TGCGCTTGAT CATCAACGAC CGCGAGAATC CCACCAAGGT CAAGGAGATC
AAGGAGCAGG AAGTCTACAT GGGCGAAATT CCGCTCATGA CCTCCACCGG TTCGTTCGTG
ATCAACGGGA CGGAACGTGT GATCGTGTCC CAGCTGCATC GTTCGCCGGG CGTGTTCTTC
GAGCACGACA AGGGCAAGAC GCACAGCTCG GGCAAGCTGC TGTTCTCGGC GCGGATCATT
CCGTACCGCG GCTCGTGGCT CGATTTCGAA TTCGACCCGA AGGACATCCT GTACTTCCGC
GTCGACCGCC GCCGCAAGAT GCCGGTGACG ATCCTGCTGA AGTCGATTGG CCTGACGCCG
GAACAGATCC TGGCGCACTT CTTCGTGTTC GATAACTTCA CGCTGAAGAC CGAAGGCGCA
CTGATGGAAT TCGTGCCCGA GCGTCTGCGC GGTGAAGTCG CTCGCTTCGA CATTTCCGAC
AAGAACGGCA AGGTCGTGGT CGAGAAGGAC AAGCGCATCA ACGCCAAGCA CATCCGCGAC
CTGGATTCCG CGGGCACCAA GCTGATCAGC GTGCCGGAAG ACTACCTGCT GGGCCGCGTG
CTGGCGAAGA ACATCGTCGA TCCGGACACC GGTGAAGTCC TGGCCAACGC CAACGACGAA
CTGACCGAAG GCGTGCTCGA GAAGCTGCGT GATGCCGGCG TGAAGGAAAT CCAGACGCTG
TACACGAACG ACCTGGATCA GGGTCCGTAC ATGTCCGCGA CGCTGCGCAC GGACGACACG
GCCGACCAGA CCGCCGCGCG TATCGCGATC TATCGCATGA TGCGCCCGGG CGAGCCGCCG
ACCGAAGACG CCGTCGAAGC GCTGTTCCAA CGTCTGTTCT ACAGCGAAGA CTCGTACGAC
CTGTCGCGCG TTGGCCGCAT GAAGGTCAAC AGCCGCCTGA ACCGCTCGAC CGGTACCGGC
CCGATGGTGC TGACCGACGA GGACATCCTC GACACGATCA AGCTGCTGGT GAATCTGCGT
AACGGCAAGG GCGAAGTGGA CGATATCGAC CACCTCGGCA ACCGTCGCGT GCGTTGCGTC
GGCGAACTGG CGGAAAACCA GTTCCGCGCC GGTCTGTCGC GCGTTGAGCG TGCCGTGAAG
GAACGTCTGG GTCAGGCCGA GACGGAAAAC CTGATGCCGC ACGACCTGAT CAACTCGAAG
CCGATTTCGT CAGCGATCCG CGAGTTCTTC GGTTCGTCGC AGCTGTCGCA GTTCATGGAC
CAGACCAACC CGCTGTCGGA AGTCACGCAC AAGCGTCGTA TTTCGGCACT GGGCCCGGGC
GGTCTGACGC GCGAGCGTGC GGGCTTTGAA GTCCGTGACG TGCACCCGAC CCACTATGGC
CGCGTGTGCC CGATCGAAAC GCCGGAAGGT CCGAACATTG GTCTGATCAA CTCGCTGGCG
CTGTACGCAC AGCTGAACGA CTACGGCTTC CTCGAAACGC CGTACCGCAA GGTTGAAAAC
GGCAAGCTGA CCGACCAGGT GGATTACCTG TCGGCCATCG AGGAAGGCAA GTACGTGGTG
GCGCAGGCCA ACGCGACGCT TGACAAGGAC GGCAACCTGA TCGACGAGCT GGTTTCCGCG
CGCGAAGGCA GCGAGCGTGA AACCCGTATG GTCACGCCGG ACCGCGTGCA GTACATCGAC
GTGGCACCGT CGCAGATCGT GTCGGCTGCA GCTTCGCTGG TGCCGTTCCT CGAGCACGAT
GATGCAAACC GTGCACTGAT GGGCGCGAAC ATGCAGCGTC AGGCCGTGCC TTGCCTGCGT
GCAGACAAGC CGCTCGTGGG TACGGGCGTC GAGCGCACCG TGGCAGTGGA CTCGGGTACC
GCCGTGCAGG CAACCCGTGG CGGCGTGGTC GACTATGTTG ACGCGAACCG CGTGGTGATC
CGCGTGAATG ACGACGAAGC CGTGGCCGGT GAAGTCGGCG TGGACATCTA CAACCTGATC
AAGTACACGC GTTCGAACCA GAACACGAAC ATCAACCAGC GTCCGATGGT CAAGGTGGGC
GACATCGTTG CCCGCGGCGA CGTGATTGCT GACGGCGCCT CGACCGACAT GGGCGAGCTT
GCGCTCGGCC AGAACATGCT GGTCGCGTTC ATGCCCTGGA ACGGCTACAA CTTCGAAGAT
TCGATCCTGA TCTCGGAGCG CGTCGTGGCT GAAGACCGCT ACACCTCGAT CCACATCGAG
GAACTGTCGG TCGTCGCCCG CGACACCAAG CTCGGACCGG AAGAAATCAC GCGCGACATC
TCGAACCTGG CCGAAGCCCA ACTGGCTCGC CTGGACGAGT CGGGCATCAC GTACATCGGC
GCGGAAGTGG AAGCCGGCGA CGTGCTGGTC GGCAAGGTCA CGCCCAAGGG CGAGACCCAG
CTGACGCCGG AAGAAAAGCT GCTGCGTGCG ATCTTCGGTG AGAAGGCGTC CGACGTGAAG
GACACCTCGC TGCGCGTGCC GTCGGGCATG AGCGGTACCG TGATCGACGT GCAGGTCTTC
ACGCGTGAAG GCGTGGTGCG TGACAAGCGT GCCCAGTCGA TCATCGACGA AGAGCTGAAG
CGCTATCGCC TGGACCTGAA CGACCAGCTG CGTATCGTGG AAGGCGATGC CTTCCAGCGT
CTGGAGCGTC TGCTGGTGGG CAAGGTTGCC AACGGCGGCC CGAAGAAGCT GGCCAAGGGC
ACCGCGCTCA CGAAGGAATA CCTGGGCGAT CTGGACAAGT GGCACTGGTT CGACATCCGC
CCGGCAGAAG ACGAAGTCGC GCTGCAGCTG GAAGCCGTGA AGGTTGCCAT CGAGCAGAAG
CGCCACGACT TCGACCTCGC GTTCGAAGAG AAGCGCAAGA AGCTCACGCA AGGCGACGAA
CTGCCGCCGG GCGTGATCAA GATGGTCAAG GTGTATCTGG CCGTGAAGCG TCGCCTGCAG
CCGGGCGACA AGATGGCCGG CCGTCACGGT AACAAGGGTG TTGTGTCGAA GATCACCCCG
ATCGAAGACA TGCCGTACAT GGCCGACGGC ACACCTGCTG ACATCGTGCT GAACCCGCTG
GGCGTGCCTT CGCGGATGAA CGTGGGTCAG ATTCTCGAAA CCCACCTGGG CTGGGCCGCG
CGCGGTCTGG GCGAGCGCAT CGGCAACATG CTCAAGGCGC AAGCCAAGGC TGCCGAGATC
CGCAAGCTGC TGGAGCAGAT CTACAACGAA AGCGGCAAGG TTGAAGATCT GGACAGCCTG
TCCGACGCTG AAATCCTCGA GCTGGCCGAG AACCTGAAGA AGGGCGTGCC GTTCGCGACG
CCGGTGTTCG ATGGTGCGCA TGAGGATGAA ATCCGCCGCA TGCTGGACCT CGCCTATCCG
GAAGACATCG CGAAGGAGAA GGGTCTGACC GCTTCCAAGC AGCAGGTCAC GCTGTTCGAC
GGTCGCACCG GTGAAGCCTT CGAGCGTCCG GTCACGCTGG GCGTGATGCA CATGCTGAAG
CTGCACCACT TGGTCGACGA CAAGATGCAC GCGCGCTCGA CCGGTCCGTA CTCGCTGGTG
ACGCAGCAGC CGCTGGGCGG TAAGGCCCAG TTCGGTGGCC AGCGTTTCGG TGAAATGGAA
GTGTGGGCAC TCGAAGCGTA CGGCGCATCC TACGTGCTGC AGGAAATGCT GACCGTGAAG
TCGGATGACG TGAACGGCCG GACCAAGGTG TACGAGAACA TCGTCAAGGG CGAGCACTCG
ATCGATGCCG GCATGCCGGA ATCGTTCAAC GTGCTGGTGA AGGAAATCCG CTCGCTGGGT
ATCGACATCG ACCTCGAGCG CAACTAA
|
|---|
| Protein sequence | MAYSFTEKKR IRKSFAKRAT VHQVPFLLAT QIQSYAQFLQ ENTPVAQRKS EGLQAAFNAI
FPIVSHNGLA RMEFVSYHLS NPPFDVKECQ QRGLTFHSAL RAKVRLIIND RENPTKVKEI
KEQEVYMGEI PLMTSTGSFV INGTERVIVS QLHRSPGVFF EHDKGKTHSS GKLLFSARII
PYRGSWLDFE FDPKDILYFR VDRRRKMPVT ILLKSIGLTP EQILAHFFVF DNFTLKTEGA
LMEFVPERLR GEVARFDISD KNGKVVVEKD KRINAKHIRD LDSAGTKLIS VPEDYLLGRV
LAKNIVDPDT GEVLANANDE LTEGVLEKLR DAGVKEIQTL YTNDLDQGPY MSATLRTDDT
ADQTAARIAI YRMMRPGEPP TEDAVEALFQ RLFYSEDSYD LSRVGRMKVN SRLNRSTGTG
PMVLTDEDIL DTIKLLVNLR NGKGEVDDID HLGNRRVRCV GELAENQFRA GLSRVERAVK
ERLGQAETEN LMPHDLINSK PISSAIREFF GSSQLSQFMD QTNPLSEVTH KRRISALGPG
GLTRERAGFE VRDVHPTHYG RVCPIETPEG PNIGLINSLA LYAQLNDYGF LETPYRKVEN
GKLTDQVDYL SAIEEGKYVV AQANATLDKD GNLIDELVSA REGSERETRM VTPDRVQYID
VAPSQIVSAA ASLVPFLEHD DANRALMGAN MQRQAVPCLR ADKPLVGTGV ERTVAVDSGT
AVQATRGGVV DYVDANRVVI RVNDDEAVAG EVGVDIYNLI KYTRSNQNTN INQRPMVKVG
DIVARGDVIA DGASTDMGEL ALGQNMLVAF MPWNGYNFED SILISERVVA EDRYTSIHIE
ELSVVARDTK LGPEEITRDI SNLAEAQLAR LDESGITYIG AEVEAGDVLV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVK DTSLRVPSGM SGTVIDVQVF TREGVVRDKR AQSIIDEELK
RYRLDLNDQL RIVEGDAFQR LERLLVGKVA NGGPKKLAKG TALTKEYLGD LDKWHWFDIR
PAEDEVALQL EAVKVAIEQK RHDFDLAFEE KRKKLTQGDE LPPGVIKMVK VYLAVKRRLQ
PGDKMAGRHG NKGVVSKITP IEDMPYMADG TPADIVLNPL GVPSRMNVGQ ILETHLGWAA
RGLGERIGNM LKAQAKAAEI RKLLEQIYNE SGKVEDLDSL SDAEILELAE NLKKGVPFAT
PVFDGAHEDE IRRMLDLAYP EDIAKEKGLT ASKQQVTLFD GRTGEAFERP VTLGVMHMLK
LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAS YVLQEMLTVK
SDDVNGRTKV YENIVKGEHS IDAGMPESFN VLVKEIRSLG IDIDLERN
|
|---|
| |