| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2944 |
|---|
| Symbol | rpsC |
|---|
| ID | 8020616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 3092498 |
|---|
| End bp | 3093292 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644831731 |
|---|
| Product | 30S ribosomal protein S3 |
|---|
| Protein accession | YP_002982886 |
|---|
| Protein GI | 241664526 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0092] Ribosomal protein S3 |
|---|
| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.012288 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000133007 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGGACAGA AGATTCATCC GACTGGCTTC CGTCTGGCTG TCAGCCGTAA CTGGGCATCG
CGTTGGTACG CGAGCAACAC CCAGTTTGCC GGCATGCTCA AGGAAGACAT CGAGGTTCGC
GAGTTTCTGA AGAAGAAGCT GAAGAACGCG TCGGTGGGCC GCGTGGTCAT CGAGCGTCCG
GCCAAGAATG CTCGTATCAC CATTTACAGC TCACGTCCGG GCGTGGTGAT CGGCAAGAAG
GGCGAGGACA TCGAACTGCT GAAGGCCGAA CTGCAGCGTC GCATGGGCGT GCCCGTGCAC
GTTAACATCG AAGAAATCCG CAAGCCGGAA GTCGATGCAC AGCTGATCGC CGATTCGATC
ACGCAGCAGC TCGAGCGCCG CATCATGTTC CGTCGCGCAA TGAAGCGCGC GATGCAGAAC
GCGATGCGTC TGGGTGCCCA AGGCATCAAG ATCATGAGCT CGGGCCGTCT GAACGGCATC
GAAATCGCCC GTACCGAGTG GTACCGCGAA GGCCGTGTGC CCCTGCACAC GCTGCGCGCA
GATATCGACT ACGGCTTCTC CGAAGCGGAA ACCACCTACG GCATCATCGG TGTCAAGGTG
TGGGTATACA AGGGTGACCA CCTCGGTCGC AACGACGCAC CCGTCGTGGA AGAGCCGCAA
GAAGAGCGCC GCAAGCGTCC GGGTCGCCCG GAAGGTCGTC GCCGTGAGGG CGAAGGTCGC
CCGGCCGGTC AGCGCCGCGG TGCTGGTGCT GGTGCAGGTG CCCGTCGTGG CGCCGACGCC
AAGACTGGAG AATAA
|
|---|
| Protein sequence | MGQKIHPTGF RLAVSRNWAS RWYASNTQFA GMLKEDIEVR EFLKKKLKNA SVGRVVIERP
AKNARITIYS SRPGVVIGKK GEDIELLKAE LQRRMGVPVH VNIEEIRKPE VDAQLIADSI
TQQLERRIMF RRAMKRAMQN AMRLGAQGIK IMSSGRLNGI EIARTEWYRE GRVPLHTLRA
DIDYGFSEAE TTYGIIGVKV WVYKGDHLGR NDAPVVEEPQ EERRKRPGRP EGRRREGEGR
PAGQRRGAGA GAGARRGADA KTGE
|
|---|
| |