| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2925 |
|---|
| Symbol | rpsD |
|---|
| ID | 8020597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 3083822 |
|---|
| End bp | 3084445 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644831712 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_002982867 |
|---|
| Protein GI | 241664507 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000227191 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCACGCT ATACCGGTCC CAAGGCGAAA CTGTCTCGCC GCGAAGGTAC TGACCTTTTC
CTGAAGAGCG CACGTCGCTC CCTCGCCGAC AAGTGCAAGC TGGACAGCAA GCCTGGTCAG
CACGGCCGCA CCTCCGGCGC CCGCACCTCC GACTACGGCA ACCAACTGCG TGAAAAGCAG
AAGGTCAAGC GCATCTACGG CGTGCTTGAG CGTCAGTTCC GCCGCTACTT CGCTGAAGCC
GATCGTCGCA AGGGCAACAC GGGTGAGACC CTGTTGCAAC TGCTGGAATC GCGCTTGGAC
AACGTCGTGT ACCGCATGGG CTTCGGCTCG ACCCGCGCAG AGGCGCGTCA GCTGGTGTCG
CACAAGGCGA TTCTGGTGAA CGGTCAAGCC CTGAACGTGC CGTCGGCCCA GATCAAGACG
GGCGACGTGA TTGCCATCCG TGAAAAGTCG AAGAAGCAAG TGCGTATTGC TGAATCGCTG
ACGCTGGCAG AGCAAACCGG CTTCCCGACG TGGGTTGCTG TGGATGCCAA GAAGATGGAA
GGCACCTTCA AGCAAGTTCC GGATCGCGCA GATATCGCCG GCGACATCAA CGAAAGCCTG
ATCGTCGAAT TGTATTCGCG TTAA
|
|---|
| Protein sequence | MARYTGPKAK LSRREGTDLF LKSARRSLAD KCKLDSKPGQ HGRTSGARTS DYGNQLREKQ
KVKRIYGVLE RQFRRYFAEA DRRKGNTGET LLQLLESRLD NVVYRMGFGS TRAEARQLVS
HKAILVNGQA LNVPSAQIKT GDVIAIREKS KKQVRIAESL TLAEQTGFPT WVAVDAKKME
GTFKQVPDRA DIAGDINESL IVELYSR
|
|---|
| |