| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2910 |
|---|
| Symbol | |
|---|
| ID | 8020582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 3068332 |
|---|
| End bp | 3069603 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644831697 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_002982852 |
|---|
| Protein GI | 241664492 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00334908 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCCAC TCATGTCCGA GTCCCTGATC CGCCAGGAAG GCGCGCTGAT GATCGAAGGC
GTCGCGCTCG ACGCGATTGC CGCGCAGTTC GGCACGCCCA CCTACGTGTA CTCGCGCGCC
GCCCTCACTG CCAACTATCG CGCCTACGCC GCCGCATGCG AGGGCCGCAA CGCGCATGTG
CAGTACGCCA TGAAAGCCAA CTCGAACCTG GCCGTGCTGC AGGTATTCGC CCAGCTTGGC
GCAGGCTTTG ACATCGTGTC CGCCGGCGAA CTCAAGCGTG TGCTGGCCGC CGGTGCGCCG
GCCGCGAAGG TGGTGTTCTC GGGCGTGGGC AAGAGCGCGG ACGAAATGCG ATTCGCCCTG
AAAGTGGGCG TGGCGTGCTT CAACGTGGAG TCGATCCCCG AGCTGCACCG GCTGAATGAC
GTGGCCGCAT CGATGGGCAA GGTCGCGCCC GTGTCGCTGC GCATCAACCC GGACGTGGAT
GCCAAAACGC ATCCGTATAT CTCGACGGGC CTGAAGGGCA ACAAGTTCGG CGTGGCGTTT
GACGAAGTGC TGCCGACCTA CCGCGCAGCC GCTGCGATGC CGAACCTGCG CGTGGTCGGC
ATCGACTGCC ATATCGGCTC GCAGATCACC GAGGTATCGC CGTATCTGGA TGCGCTGGAC
AAGGTGCTCG ACGTGGTGAC GCAGCTCGAC GCCGAGGGCA TCCGCCTCGC GCACATCGAT
GTGGGCGGCG GTCTGGGTAT CACGTACACG GACGAGACGC CGCCGGACAT CACGGCCTTC
GCGCGCACGC TGCTGGACCG CGTCGAGCAG CGCGGTTTTG GCGATCGCAC CGTGCTGTTC
GAGCCGGGCC GGTCACTGGT GGGCAACGCC GGCCTGCTGC TCACGCGCGT CGAATACCTC
AAGCCTGGGG CGAGCAAGAA CTTCTGCATC GTGGATGCGG CCATGAATGA CCTGGCCCGC
CCGGCGATGT ACGAGGCGTA TCACCACATC GTGCCGGTGC GCGAAAGCCA AAGCGCGCCG
GTCGTCTACG ACGTGGTGGG CCCCGTGTGC GAATCCGGCG ACTGGCTCGG CCGCGACCGT
TCGCTGGCCG TGCAGCCGGG CGATGTGGTG GCGATCCTGT CGGCCGGCGC GTACGGTTTC
ACGATGAGTT CGAACTACAA CACGCGCAAT CGCGCGGCCG AGGTCATCGT TGATGGCGAC
AAAGTCCACT TGGCGCGCGA GCGCGAGTGC TTCGAAGACT TGATCCGCGG CGAGCATCTG
TTCCCGGCAT AA
|
|---|
| Protein sequence | MLPLMSESLI RQEGALMIEG VALDAIAAQF GTPTYVYSRA ALTANYRAYA AACEGRNAHV
QYAMKANSNL AVLQVFAQLG AGFDIVSAGE LKRVLAAGAP AAKVVFSGVG KSADEMRFAL
KVGVACFNVE SIPELHRLND VAASMGKVAP VSLRINPDVD AKTHPYISTG LKGNKFGVAF
DEVLPTYRAA AAMPNLRVVG IDCHIGSQIT EVSPYLDALD KVLDVVTQLD AEGIRLAHID
VGGGLGITYT DETPPDITAF ARTLLDRVEQ RGFGDRTVLF EPGRSLVGNA GLLLTRVEYL
KPGASKNFCI VDAAMNDLAR PAMYEAYHHI VPVRESQSAP VVYDVVGPVC ESGDWLGRDR
SLAVQPGDVV AILSAGAYGF TMSSNYNTRN RAAEVIVDGD KVHLAREREC FEDLIRGEHL
FPA
|
|---|
| |