| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2902 |
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| Symbol | |
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| ID | 8020574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 3059547 |
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| End bp | 3061712 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644831689 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_002982844 |
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| Protein GI | 241664484 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.123013 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGC GTCTTGTGAA GGGCGGCCTG TCGCAGGCAG CCCGAGTGGC CCGGGGGGGC
GCGGTGGCAT GGCTTTCGCT GTGCCTGTTC ATGGTGGCCG GTCAGGCGGT CGCCCAGCAG
GCAGCGCCTG CGGCGGCCGT CTCCGGCAAC ACGATCGAAA AGGTGGAGCA GGCCACGGCC
GGTGAATCCA CCGTGGTGAC GGTCACGCTC AAGAGCGCGC CGACGCAGAA ACCGGTGGAG
TTCAGCACGC AGCAGCCTGC GCGTATCGCC ATCGACTTCT TCGGGGCCAG CTTCGCGCAG
GGCCGCGCCA ATTACCAGTA CGGCGGCAAG CTGCTGCGTT CGGCGAACGT CGTGCAGATC
GGCGACCGTA CCCGCGTCGT GCTCGATCTA TCGCGCCAGA CGCAATACAA GTCGGAGGTG
CGTGGCAACC AGTACGTACT GACGCTGGAA GCTGCGCCAG TGGCGGCGGC TGTCGCGGCG
CCGACATTCT CGGCCCCGGC ACCCGTCGCG GGCGCTGAGC GCCCGGCGGT GCGCAATGTT
GATTTCCGCC GTGGCGAGGA CCTTGCTGGC CGCGTGGTGG TCGATCTGTC GACTGCCAAC
TCGGCGATCA ACATCGCCCA GCAAGGCCAG AACCTCGTCG TGGACTTCGT CGGTGCGACG
CTGCCACAGT CGCTGCGCCG TCGCTATGAC GTGAGCGATT TCGGCACGCC GGTGCAGGCC
ATGCGTGCCA CCGACAACGG CACAGGTGCA CGCCTGATCA TCGAGCCGCG CGGTAACTGG
CAATACAGCT CGTACCAGAC CGACACGCAG TTCGTGGTGG AGGTGCGTCC GACCAAGGAA
GACCCGAACA AGCTGATTTC TGGCCCCGGC TACCGCGGTG AGCGCCTGTC GCTGAACTTC
CAGAACATCG ATGTGCGTTC GCTGCTGCAA GTCTTCGCCG ACTTCACGAA CCTCAACATC
GTGACCAGCG ATAGCGTGAC GGGCACCCTT TCGCTGCGCC TGAAAGATGT GCCCTGGGAT
CAGGCACTGC AGATCGTGCT CGATTCGAAG GGGCTGGCAT CGCGTCGCAA CGGCAACGTC
CTGTGGGTTG CCCCGCGCGG TGAGCTGGCC ACGAAGGAAA AGGCCGAGCT TGAGTCGCAG
CAGCAAGTGA CCGAGCTGGA GCCACTGCGC AGCCAGGTGT TCCGCCTGAA CTACCAAAGC
GCTGGGGATG TGCGCAACAT GCTGCTGGGT GCCGGCGCCG CGGGTGGGGC AGGCGGTGTC
GCTGGCGGTG TCGCGACTTC CCGGATCCTG TCCAAGCGCG GCTCGCTCAC CGCGGATACG
CGGACGAATC AACTGTTCGT CTCCGACATC CCGAGCAAGC TTGAAGAGGT GCAGGCCTTC
CTCTTGAAGA TCGACATCCC GGTTCGCCAG GTGATGATCG AGGCGCGCAT CGTCGAGGCG
GACGACACGT TCAGCCGCAA CTTGGGTGCG AAGCTGGGCT TCGCGTCGAA GACGAATGGC
GCTGGTTACG GCAATACCTA CACCAACGTG GTGTCGCCGA TTACGCAGGG TGCCACGTGG
GACAACAGCC CGGCGATCAG CTTCCCCGCC AATGGCATCA ACGGCGTGAA CGCAGCCAGC
GTGGCCGTGA GCCTGTTTAA CGCCGGTGCC GGCCGCTTCC TGGCGCTGGA GCTGTCTGCG
CTGGAAGCTG ACGGCCGCGG CAAGATCGTC TCCAGCCCGC GCGTGGTCAC TGCCGACAAC
ATCAAGGCGC TGATCGAGCA AGGTACTGAG ATTCCGTACC AGCAGGCGAC GTCTTCCGGT
GCGACTTCGG TGTCGTTCAA GAAGGCCAAC CTGAAGCTGG AAGTGACGCC CAAGATCACG
CCGGACGGCA ACATCTTCCT GGATGTGGAC GTCAACAAGG ACAGCGTAGG TATCCAGACC
ACCAACGGCT TCGCCATTGA CACCAAGCAC GTGCAGACGC AGGTGCTGGT CGAGAATGGC
GGCACGGTCG TGATCGGCGG TATCTACACG CAGAACGAGC GGACCGACAT CAACAAGGTG
CCGCTTCTAG GCGACATTCC GGTACTCGGC AATCTGTTCA AGAGCACGAG CAAGATCAAC
AACCGCACCG AGCTGCTGGT CTTCCTGACG CCGCGTGTGC TGTCCGATCA ACTGTCGCTG
AAGTAA
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| Protein sequence | MTMRLVKGGL SQAARVARGG AVAWLSLCLF MVAGQAVAQQ AAPAAAVSGN TIEKVEQATA
GESTVVTVTL KSAPTQKPVE FSTQQPARIA IDFFGASFAQ GRANYQYGGK LLRSANVVQI
GDRTRVVLDL SRQTQYKSEV RGNQYVLTLE AAPVAAAVAA PTFSAPAPVA GAERPAVRNV
DFRRGEDLAG RVVVDLSTAN SAINIAQQGQ NLVVDFVGAT LPQSLRRRYD VSDFGTPVQA
MRATDNGTGA RLIIEPRGNW QYSSYQTDTQ FVVEVRPTKE DPNKLISGPG YRGERLSLNF
QNIDVRSLLQ VFADFTNLNI VTSDSVTGTL SLRLKDVPWD QALQIVLDSK GLASRRNGNV
LWVAPRGELA TKEKAELESQ QQVTELEPLR SQVFRLNYQS AGDVRNMLLG AGAAGGAGGV
AGGVATSRIL SKRGSLTADT RTNQLFVSDI PSKLEEVQAF LLKIDIPVRQ VMIEARIVEA
DDTFSRNLGA KLGFASKTNG AGYGNTYTNV VSPITQGATW DNSPAISFPA NGINGVNAAS
VAVSLFNAGA GRFLALELSA LEADGRGKIV SSPRVVTADN IKALIEQGTE IPYQQATSSG
ATSVSFKKAN LKLEVTPKIT PDGNIFLDVD VNKDSVGIQT TNGFAIDTKH VQTQVLVENG
GTVVIGGIYT QNERTDINKV PLLGDIPVLG NLFKSTSKIN NRTELLVFLT PRVLSDQLSL
K
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