| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2751 |
|---|
| Symbol | |
|---|
| ID | 8020422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2915743 |
|---|
| End bp | 2916204 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644831538 |
|---|
| Product | phenylacetic acid degradation protein PaaD |
|---|
| Protein accession | YP_002982694 |
|---|
| Protein GI | 241664334 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00224854 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAGAAA CGACCCTCCA CGATGCGCAG GCCCTGGCTG AAGCGGCCTG CAAAAGCATG
TTCGACGCTG ATGCCTGCAC CCGCTGGCTC GGCATGCGCG TGGAGGCGGT CGCGCCCGGC
TATGCACGGC TGTCGATGGC GGTGCGGCCT GAATTCCTCA ACGGGCATCG CACCTGCCAT
GGTGGGCTCA TCTTCACGCT CGCCGACTCG GCTTTTGCGT TTGCCTGCAA CAGCCACAAC
CACAACACGG TGGCGGCTGG TTGCAGCGTC GAATTCCTGC GCCCGGCACA CGGCGGCGAT
GTGCTCGTCG CAGAGGCAAC CGAGCAGGTT TTATCCGGTC GCCATGGTAT CTACGACGTA
CGCGTAACAA ACCAGGCCGG CGAGGTGGTC GCCATGTTTC GAGGGAAGTC CGCGCAGATT
CGCGGCCCGG CCATTCCGGT CACTGGCAGC GCAGAACCCT AG
|
|---|
| Protein sequence | MTETTLHDAQ ALAEAACKSM FDADACTRWL GMRVEAVAPG YARLSMAVRP EFLNGHRTCH
GGLIFTLADS AFAFACNSHN HNTVAAGCSV EFLRPAHGGD VLVAEATEQV LSGRHGIYDV
RVTNQAGEVV AMFRGKSAQI RGPAIPVTGS AEP
|
|---|
| |