| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2527 |
|---|
| Symbol | |
|---|
| ID | 8020191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2653863 |
|---|
| End bp | 2655470 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644831308 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_002982471 |
|---|
| Protein GI | 241664111 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0731082 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACTCGC CAAAACCGGT CTCCGACGCG CCAGACGGGC GGCGCTTTGG AATCGCTTCT
CCGTCGATCT TGCGCCCTAT CCGGGTGCGG CTGACGCTGG TGTTCGTGGT TTTTTTACTG
TTGGTGGTTG GCGTCGGCGC TTTCAGTATC GACCAATTGG CGAGTTTCCA CAGCGTATCT
GCGCAGATCA GCGGGCGCTG GCTTCAGAAC AGCCGAATTC TAGGGGACCT GAACAACTAC
ATCTCGGATT ACCGCGCGGC CGAAGGCGAT TTTCTGATCG CCTCGTCACG CGCCGATCTG
CGAGCTGCCG ACGAACAGGT CGCCATGCTA GACAAGTTGA TTGCCACGTC CCAAGCCCGC
TACGACAAGA TCGAGCACGA TAGTGCCGAA CACGAGCTCT ACAGCCAGTT TGTCACCCAA
TGGAATACGT ATCGTGAGCT CGCGAAACGG CTGATGATTA CTGCCAAGGC AGGCGACGTA
GGGGGCGGTA CGCGGCTCTA CCACACGGAC TCCAAGCATG CATTCGACTT GGCCAACGAC
ACACTGGGCG TGATGACCGA GCGCAGTGTC GCTGGCGCGG CAGCAGAAAC CGAGCGTGAG
GCACAGGCCT ACCACGACGC GCGGCAACTC ATCATTGGGG CGATCGTAGT GGCGGCATGG
CTGGTCGTGC TGGCTGTGAT CTACCTTGTC TACGCTGTGT CGCGGCCGAT TGCTGCGTTG
GTCGATCGCA TGCACCACAT TGCCAACAAC GACACCCGGA TCGACATCCC TGGCTTGGAG
CGCCACGACG AGATCGGCGA TATTGCGCAG GCCGTGGCGC GCTTTCGAGA AAACACAATC
GAATTGGGAC GCAGCAAGGA TGCACTGATT GCCCAAGCCG CCGTATTGCA GGAGACGCTC
GACAAGGAGC GTCGCATGGC TGAGCTGCAG CGCAATTTCG TCTCGATGGC TTCGCATGAA
TTCCGCACAC CACTAGGCGT GATTGATGGT CAGGCCCAGC GGTTGATGCG CATGCGTGAC
GCTTTGCCGC CTGAGGCGCT GGAAGAGCGC TGCGGGAAAA TTCGCGCGGC GGTGCAGCGC
ATGACGCACC TCATGGATCA CCTGCTCGAC TCTTCGCACT GGTTAGATTC CACGACGCCC
GCAGCGATGC GGCGCACCGA TTTGCCGCTT GCGGCACTTT TGCACGAGGT TTGCGAGATG
CACCGGGAAA GTACGCCAAG CGCACGGATC GACGAGTGCG TAGAGACTGA TGAGCCGAAC
ACATTCTTCG GCGATGCCCG GCTTCTGTTC CAGGCCTTCA GCAATCTTGT CGGCAACGCC
GTCAAGTACT CACCGCCAGG CACACCGGTC AGCGTGCGTA TGCGCAGCGA TGCCGACGGT
GTGTCGGTGA CGGTTGAAGA CCGGGGCATG GGCATACCCG AACGCGATAT CGAGCGTTTG
TTCGAGCGCT ACGTGCGTGG GGGCAACGTT GCGGGGACGG TCGGGGCAGG TGTAGGGCTT
TATTTGGTGA AGCTGGTAGT GGAACTGCAC AGAGGGACGA TCACCGTGAC CAGCGAAGAA
GGCAAAGGCT CAACATTCAA CGTGTTCTTA CCCCGCCTGA AAAGCTAG
|
|---|
| Protein sequence | MHSPKPVSDA PDGRRFGIAS PSILRPIRVR LTLVFVVFLL LVVGVGAFSI DQLASFHSVS
AQISGRWLQN SRILGDLNNY ISDYRAAEGD FLIASSRADL RAADEQVAML DKLIATSQAR
YDKIEHDSAE HELYSQFVTQ WNTYRELAKR LMITAKAGDV GGGTRLYHTD SKHAFDLAND
TLGVMTERSV AGAAAETERE AQAYHDARQL IIGAIVVAAW LVVLAVIYLV YAVSRPIAAL
VDRMHHIANN DTRIDIPGLE RHDEIGDIAQ AVARFRENTI ELGRSKDALI AQAAVLQETL
DKERRMAELQ RNFVSMASHE FRTPLGVIDG QAQRLMRMRD ALPPEALEER CGKIRAAVQR
MTHLMDHLLD SSHWLDSTTP AAMRRTDLPL AALLHEVCEM HRESTPSARI DECVETDEPN
TFFGDARLLF QAFSNLVGNA VKYSPPGTPV SVRMRSDADG VSVTVEDRGM GIPERDIERL
FERYVRGGNV AGTVGAGVGL YLVKLVVELH RGTITVTSEE GKGSTFNVFL PRLKS
|
|---|
| |