Gene Rpic12D_2400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2400 
Symbol 
ID8020064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2521921 
End bp2522349 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content66% 
IMG OID644831181 
ProductBiopolymer transport protein ExbD/TolR 
Protein accessionYP_002982344 
Protein GI241663984 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0584856 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTTCC GCCCGCGCCG TGCCCGCGAA GAGCCGGAGA TCAACCTGAT CCCGCTGATC 
GCCGTGCTGC TCGTGATCCT CATCTTCCTG ATGATCACGA CCACGTATTC CCGCTATACC
GAACTGAAGG TCAACCTGCC CACTGCCGAG GCTGAAAAAG CCACCGAGCG CCCGGGCCAG
ATCGTCGTGT CCGTCACCGC CAACGGCGTC TACTCTGTCG ACAAGCAAGT GCTCGACACG
CGCGATGTCA CCAGCCTGGC CGATGCGCTG CGCAATGCCG CGGGCAAGGC CGGCGGCCCC
GAGCCCATCG TCATCGTCAA CGCCGATGCG CAAGCCGCGC ACCAGGCGGT GGTCAATGTC
ATGGAAGCCG CGCGGGTGGC CGGTCTGTCG CACCTGACCT TCGCCACGCA AACCGGCAAC
GCCCGCTAA
 
Protein sequence
MRFRPRRARE EPEINLIPLI AVLLVILIFL MITTTYSRYT ELKVNLPTAE AEKATERPGQ 
IVVSVTANGV YSVDKQVLDT RDVTSLADAL RNAAGKAGGP EPIVIVNADA QAAHQAVVNV
MEAARVAGLS HLTFATQTGN AR