Gene Rpic12D_2288 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2288 
Symbol 
ID8019952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2416399 
End bp2417232 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content68% 
IMG OID644831071 
Productpentapeptide repeat protein 
Protein accessionYP_002982234 
Protein GI241663874 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00748476 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value6.82389e-11 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAAGTTCG AGATCAAAAA CCGCTTCACC GGTGCCGTGC TGTTCGAGTG CGACGCTGAA 
TCGCTGATGA AGGCAGTGGA GCAAGCCGTC AAGGGCGGCG CGTACCTGAG CGGCGCGGAC
CTGAGCGGCG CGGACCTGAG CGGCGCGGAC CTGAGCGGCG CGTACCTGAG CGGCGCGTAC
CTGAGCGACG CGTACCTGCG CGGCGCGTAC CTGAGCGGCG CGTACCTGAG CGGCGCGGAC
CTGAGCGGCG CGTACCTGAG CGGCGCGGAC CTGAGCGGCG CGTACCTGAG CGACGCGTAC
CTGAGCGGCG CGTACCTGCG CGGCGCGGAC CTGAGCGGCG CGGACCTGAG CGGCGCGGAC
CTGAGCGGCG CGTACCTGAG CGGCGCGGAC CTGAGCGGCG CGTACCTGAG CGACGCGTAC
CTGCGCGGCG CGTACCTGAG CGACGCGTAC CTGAGCGACG CGGACCTGAG CGGCGCGGAC
CTGAGCGGCG CGTACCTGAG CGGCGCGGAC CTGAGCGACG CGCCCGTCAT TGAAAACATC
CACCAGAAGG TATATGCCGC CGCGTCGCAG CCCGATGCGC TGGATATGGG CGTCTGGCAC
AACTTGTGTG GCACGGCGCA CTGCCGCGCC GGCTGGGTGG TGACGATCGC AGGTGAAGCC
GGCAAGGAAC TCGAATCGAA GATCGGCACC GCCGGCGCAG CACTGGCGAT CTACCTCAAA
TCTGACCCGG AGCGCTTCAA GACTGAGCCC ATTCCGAACT TCTACTGCGA CAACGACGCG
GCGCTCGCGG ATATGAAGCG CATGGCTGAG GAAGAAGCTG CGCGAGCCGC CTAA
 
Protein sequence
MKFEIKNRFT GAVLFECDAE SLMKAVEQAV KGGAYLSGAD LSGADLSGAD LSGAYLSGAY 
LSDAYLRGAY LSGAYLSGAD LSGAYLSGAD LSGAYLSDAY LSGAYLRGAD LSGADLSGAD
LSGAYLSGAD LSGAYLSDAY LRGAYLSDAY LSDADLSGAD LSGAYLSGAD LSDAPVIENI
HQKVYAAASQ PDALDMGVWH NLCGTAHCRA GWVVTIAGEA GKELESKIGT AGAALAIYLK
SDPERFKTEP IPNFYCDNDA ALADMKRMAE EEAARAA