| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2189 |
|---|
| Symbol | |
|---|
| ID | 8019851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2331788 |
|---|
| End bp | 2332417 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644830971 |
|---|
| Product | OmpA/MotB domain protein |
|---|
| Protein accession | YP_002982135 |
|---|
| Protein GI | 241663775 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.406433 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCA AGCTTATTTC CGTCTCGCTG ATCGCCCTGC TGGCCGCCGG CTGCGCCACC
GAGCAGCAAA ACCAGACCGC CATGGGCACC GGCGTTGGCG CGGCCGTGGG CGCTGGCATC
GGCGCGCTGG TCGGCAACGG CAAGGGTGCC GCCATTGGCG GTGCGCTGGG CGCGGCAACC
GGTGCTGCCG TCGGCTACAA CTGGGGGGCA ATCAAGTCCA AGCTGGCTGG CGATACGGCC
GGCACGGGCA CGCAGATTTC GGAGCAGCCC GACGGCTCGC TCAAGCTGAA CATTCCGAGC
CAGGTCTCGT TCGATACCGA CAGCGCGGTG ATCAAGCCGT CGTTCCGCGG CCCGTTGGAT
AGCGTGGCAC AAACGCTCAC GCAACATCCG GAACTGGCCG CCAATGTGGT CGGCCACACG
GACAGCACCG GCAACCCGAA CTACAACATG ACGCTGTCGC AAAAGCGCGC GCAGAGCGTG
GCGAGCTACC TGACGGACCG CGGCGTGGCC CGCAATCGCC TGTCCGCCGA AGGCCGAGGC
CAGAATCAGC CCGTTGCCGA CAACGCCACC GAGGCTGGCC GCGCCCAAAA TCGCCGCGTC
GAAATTTATT TGAAACCAAT TCAGGGGTAA
|
|---|
| Protein sequence | MKAKLISVSL IALLAAGCAT EQQNQTAMGT GVGAAVGAGI GALVGNGKGA AIGGALGAAT
GAAVGYNWGA IKSKLAGDTA GTGTQISEQP DGSLKLNIPS QVSFDTDSAV IKPSFRGPLD
SVAQTLTQHP ELAANVVGHT DSTGNPNYNM TLSQKRAQSV ASYLTDRGVA RNRLSAEGRG
QNQPVADNAT EAGRAQNRRV EIYLKPIQG
|
|---|
| |