| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2174 |
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| Symbol | |
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| ID | 8019836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 2315685 |
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| End bp | 2317964 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644830956 |
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| Product | Lysine decarboxylase |
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| Protein accession | YP_002982120 |
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| Protein GI | 241663760 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0762291 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTCC GTTTTCCCGT CATCATCATT GACGAGGACT TCCGCTCCGA GAACATCTCC
GGGTCGGGCA TTCGCGCGCT GGCCGAGGCC ATCGAAACCG AAGGGATGGA GGTCATCGGC
CTCACCAGCT ATGGTGACCT GACCTCGTTT GCGCAGCAGT CGAGCCGCGC GTCCACCTTC
ATCGTCTCGA TCGATGACGA CGAGTTCATC AATCCCGACA ACGAGAAGCC GGAACCAGAG
GCGGTCGAAA ACTTGCGCGC CTTCGTGGCC GAAGTGCGCC GCCGCAACGC CGACATCCCC
ATCTTCCTGT ACGGCGAAAC GCGCACCTCG CGGCACCTGC CGAACGACGT GCTGCGCGAG
CTGCACGGCT TCATCCACAT GTTCGAGGAC ACGCCCGAGT TCGTGGCCCG ACACATCATC
CGTGAAGCGC GCAATTATCT GGATTCGCTG CCGCCGCCGT TCTTCAAGGC GCTGATCGAC
TACGCGCAGG ACAGCTCGTA TTCGTGGCAT TGCCCGGGGC ACTCGGGCGG CGTGGCGTTC
CTGAAGAGCC CGGTGGGGCA GGTGTTTCAC CAGTTCTTCG GCGAGAACAT GCTGCGCGCC
GACGTCTGCA ACGCGGTGGA AGAACTCGGC CAGTTGCTGG ACCATACGGG CCCGGTTGCC
GCGTCTGAGC GCAACGCAGC GCGTATCTTC GGTTCGGACC ACATGTTCTT CGTGACCAAC
GGCACGTCGA CGTCGAACAA GATGGTGTGG CACGCCAACG TGGCGCCCGG CGACATCGTG
GTCGTCGACC GCAACTGCCA CAAGTCGAAT CTGCACGCGA TCATGATGAC GGGCGCGATT
CCCGTGTTCC TGATGCCGAC GCGCAACCAC TTCGGCATCA TCGGCCCGAT CCCGAAGAGC
GAGTTCGAGC CGGAAACGAT TGCCAAGAAG ATCGCCGACC ATCCGTTTGC CAGCAAGGCC
AAGAACAAGA AGCCGCGTAT TCTGACCATC ACGCAGGGCA CGTACGACGG CGTGCTCTAC
AACGCCGAGA TGATCAAGAA CATGCTGTCG ACCGAAATCG ACACGCTGCA CTTTGACGAA
GCGTGGCTGC CGCACGCGTC GTTCCACCCG TTCTACGAGA ACATGCACGC GATCGGCCAC
GGCCGTCCGC GCAGCAAGGA CGCGCTGGTC TACGCCACGC AGAGCACGCA CAAGCTGCTG
GCCGGTCTGT CGCAGGCCTC GCAGATCCTC GTGCAGGATT CCGAGACGCG CAAGCTCGAT
ACGTATCGCT TCAACGAGGC GTATCTGATG CACACGTCGA CGAGCCCCCA GTACTCGATC
ATTGCCTCGT GCGACGTCGC CGCGGCGATG ATGGAAGCGC CGGGCGGCAC CGCGCTGGTG
GAAGAGAGCA TTGCCGAAGC GCTGGACTTC CGCCGCGCCA TGCGCAAGGT TGAGCACGAA
TACCTGGGCA CAAATGGTGG CAACGGCCGC GGCGACGACT GGTGGTTCAA GGTCTGGGGC
CCGAACGATC TGTCGGACGA AGGCATCGAA GAGCGCGCAG CGTGGATGCT CAAGGCCAAC
GAGCGCTGGC ACGGCTTCGG CAACCTGGCC GAAGACTTCA ACCTGCTTGA CCCGATCAAG
GCCACCATCA TCACCCCGGG CCTGGACGTG GACGGCAAGT TCAGCGATTC CGGCATTCCG
GCCGCCATCG TCACGCGCTA CCTCGCCGAG CACGGCATCA TCGTCGAGAA GACCGGTCTG
TACTCGTTCT TCATCATGTT CACCATTGGC ATCACCAAGG GCCGCTGGAA TTCGCTCGTG
ACGGAGCTGC AGCAGTTCAA GGACGATTAC GACAACAACC AGCCGCTGTG GCGTGTGCTG
CCGGAATTCG TGCGCCAGTA TCCGCAATAC GAGCGCATCG GCCTGCGTGA ACTGTGCGAC
AGCATCCACA GCGTCTATCA GGCCAACGAC GTGGCCCGTG TGACGACCGA GATGTACCTG
TCGGACATGG AGCCGGCGAT GATCCCGTCG GACGCCTGGG CCAAGATGGC GCACCGCGAG
ACCGAGCGTG TCGCGATCGA CGATCTCGAA GGCCGCATCA CCGGTATCCT GCTGACGCCG
TATCCGCCGG GCATTCCGCT GCTGATTCCG GGCGAGCGCT TCAACAAGAC GATCGTGCAG
TACCTGCAGT TCGCACGCGA GTTCAACAAG CTGTTCCCGG GCTTCGAGAC CGATATCCAC
GGGTTGGTCG AGGAAGAGGT CGACGGCAAG ATGGAGTACT TCGTCGATTG CGTGCGCTGA
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| Protein sequence | MKFRFPVIII DEDFRSENIS GSGIRALAEA IETEGMEVIG LTSYGDLTSF AQQSSRASTF
IVSIDDDEFI NPDNEKPEPE AVENLRAFVA EVRRRNADIP IFLYGETRTS RHLPNDVLRE
LHGFIHMFED TPEFVARHII REARNYLDSL PPPFFKALID YAQDSSYSWH CPGHSGGVAF
LKSPVGQVFH QFFGENMLRA DVCNAVEELG QLLDHTGPVA ASERNAARIF GSDHMFFVTN
GTSTSNKMVW HANVAPGDIV VVDRNCHKSN LHAIMMTGAI PVFLMPTRNH FGIIGPIPKS
EFEPETIAKK IADHPFASKA KNKKPRILTI TQGTYDGVLY NAEMIKNMLS TEIDTLHFDE
AWLPHASFHP FYENMHAIGH GRPRSKDALV YATQSTHKLL AGLSQASQIL VQDSETRKLD
TYRFNEAYLM HTSTSPQYSI IASCDVAAAM MEAPGGTALV EESIAEALDF RRAMRKVEHE
YLGTNGGNGR GDDWWFKVWG PNDLSDEGIE ERAAWMLKAN ERWHGFGNLA EDFNLLDPIK
ATIITPGLDV DGKFSDSGIP AAIVTRYLAE HGIIVEKTGL YSFFIMFTIG ITKGRWNSLV
TELQQFKDDY DNNQPLWRVL PEFVRQYPQY ERIGLRELCD SIHSVYQAND VARVTTEMYL
SDMEPAMIPS DAWAKMAHRE TERVAIDDLE GRITGILLTP YPPGIPLLIP GERFNKTIVQ
YLQFAREFNK LFPGFETDIH GLVEEEVDGK MEYFVDCVR
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