Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2074 |
Symbol | |
ID | 8019735 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 2210084 |
End bp | 2211352 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644830860 |
Product | D-amino acid dehydrogenase small subunit |
Protein accession | YP_002982025 |
Protein GI | 241663665 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00739126 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAATCG CAGTAGTCGG CGCCGGCATC ATCGGCATCA GCACGGCCCA TGCGCTGGCT CAGGAAGGCC ATCAGGTCAC CCTGGTCGAG CGCCATCCGG GCCCGGGCGA GGGCACCAGT TACGCCAACG GCGGCCAGTT GAGCTACAGC TATGTGGCGC CGCTGGCCGG CCCCGGCGTG CTTTCGCACG TGCCCGGCTG GTTGCTGCGC GGCGATTCGC CGCTGCGGCT GAAGCCATCG CTGGACCCGG CGTTGCTGCG CTGGGGGCTG CGCTTCATCG CGGCCTGCAA TCGTGACCGT GCCGACCGCA CCACGCGCGA GCTGCTTGCG CTGTCGTTCT ACAGCCGCGC ACGCATGGAA GCGTTGCGGG AGGTGTCGCC GGATCTGGCG TTCAGCTTTG CGCGCCGCGG CAAGCTGGTG GTGCATCGCG AGGCTGCGGC GTTTGAATCG GCCCGCGCGC AGGTCGGCTA TCAGGCGACG CTCGGCTGCG AGCAGCATGC ATTGTCCGCC GACGAAACGG TGGCCCACGA GCCCGCGCTT GCTAGCGTGC GTGACCGGAT TGTCGGCGCC ATCTATACGC CCGACGAAGA CGTGGCCGAT TGCCACCAGC TTTGCGTCGG CTTGTTCAAC CGGCTGCGCG CGATGCCAAA CGTGATGCTG CGCTTCAATA CCGGCGTTGA CGCGTTGTGG ACCGAAGGCC GCCGTGTGCG CGGTCTAAAA CTGGCCGATG GCGAGCAGAT TGCCGCCGAT GCGGTGGTGA TGGCAGCGGG CGTGACCAGC GCCAGGCTGC TCAGCCCGTT GCGCATCGAC CCCGGGCTCT ATCCGCTCAA GGGTTACAGC ATCAGCCTGC CGCTGGGGGA GGGCGATGTT GCCCCGGTGA TCAGCGTGAC GGATGCCGCG CGCAAGATCG TCTACGCCCG CATTGGGCAG ACGCTGCGTG TGGCGGGCAT GGCGGATCTG GTGGGCTGGT CAACGGCGCT GGATACGCGC CGCGCCCAGA CGTTGTATGA CGAAACCCGC GCGCTGTTTC CGGGTGCCAT GCGCGCCAAT GACGCGGGTG CCGATGCGGC GCCGTGGGCT GGCATGCGGC CTGCAACGCC AACGGGCGTG CCCGTGATCG GTGCGTCGCC GGTGGAGGGA CTGTGGTTGA ACGTTGGTCA CGGGGCGTTG GGCTTTACGC TGGCGCTCGG CAGCGCAGGC TTGTTGACCG ACCTGATTGC CGGCCGCAAG CCCGCGATTT CCCCAGTGCC CTATGCGCTG GCCGCGTGA
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Protein sequence | MQIAVVGAGI IGISTAHALA QEGHQVTLVE RHPGPGEGTS YANGGQLSYS YVAPLAGPGV LSHVPGWLLR GDSPLRLKPS LDPALLRWGL RFIAACNRDR ADRTTRELLA LSFYSRARME ALREVSPDLA FSFARRGKLV VHREAAAFES ARAQVGYQAT LGCEQHALSA DETVAHEPAL ASVRDRIVGA IYTPDEDVAD CHQLCVGLFN RLRAMPNVML RFNTGVDALW TEGRRVRGLK LADGEQIAAD AVVMAAGVTS ARLLSPLRID PGLYPLKGYS ISLPLGEGDV APVISVTDAA RKIVYARIGQ TLRVAGMADL VGWSTALDTR RAQTLYDETR ALFPGAMRAN DAGADAAPWA GMRPATPTGV PVIGASPVEG LWLNVGHGAL GFTLALGSAG LLTDLIAGRK PAISPVPYAL AA
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