Gene Rpic12D_2074 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2074 
Symbol 
ID8019735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2210084 
End bp2211352 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content68% 
IMG OID644830860 
ProductD-amino acid dehydrogenase small subunit 
Protein accessionYP_002982025 
Protein GI241663665 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00739126 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAATCG CAGTAGTCGG CGCCGGCATC ATCGGCATCA GCACGGCCCA TGCGCTGGCT 
CAGGAAGGCC ATCAGGTCAC CCTGGTCGAG CGCCATCCGG GCCCGGGCGA GGGCACCAGT
TACGCCAACG GCGGCCAGTT GAGCTACAGC TATGTGGCGC CGCTGGCCGG CCCCGGCGTG
CTTTCGCACG TGCCCGGCTG GTTGCTGCGC GGCGATTCGC CGCTGCGGCT GAAGCCATCG
CTGGACCCGG CGTTGCTGCG CTGGGGGCTG CGCTTCATCG CGGCCTGCAA TCGTGACCGT
GCCGACCGCA CCACGCGCGA GCTGCTTGCG CTGTCGTTCT ACAGCCGCGC ACGCATGGAA
GCGTTGCGGG AGGTGTCGCC GGATCTGGCG TTCAGCTTTG CGCGCCGCGG CAAGCTGGTG
GTGCATCGCG AGGCTGCGGC GTTTGAATCG GCCCGCGCGC AGGTCGGCTA TCAGGCGACG
CTCGGCTGCG AGCAGCATGC ATTGTCCGCC GACGAAACGG TGGCCCACGA GCCCGCGCTT
GCTAGCGTGC GTGACCGGAT TGTCGGCGCC ATCTATACGC CCGACGAAGA CGTGGCCGAT
TGCCACCAGC TTTGCGTCGG CTTGTTCAAC CGGCTGCGCG CGATGCCAAA CGTGATGCTG
CGCTTCAATA CCGGCGTTGA CGCGTTGTGG ACCGAAGGCC GCCGTGTGCG CGGTCTAAAA
CTGGCCGATG GCGAGCAGAT TGCCGCCGAT GCGGTGGTGA TGGCAGCGGG CGTGACCAGC
GCCAGGCTGC TCAGCCCGTT GCGCATCGAC CCCGGGCTCT ATCCGCTCAA GGGTTACAGC
ATCAGCCTGC CGCTGGGGGA GGGCGATGTT GCCCCGGTGA TCAGCGTGAC GGATGCCGCG
CGCAAGATCG TCTACGCCCG CATTGGGCAG ACGCTGCGTG TGGCGGGCAT GGCGGATCTG
GTGGGCTGGT CAACGGCGCT GGATACGCGC CGCGCCCAGA CGTTGTATGA CGAAACCCGC
GCGCTGTTTC CGGGTGCCAT GCGCGCCAAT GACGCGGGTG CCGATGCGGC GCCGTGGGCT
GGCATGCGGC CTGCAACGCC AACGGGCGTG CCCGTGATCG GTGCGTCGCC GGTGGAGGGA
CTGTGGTTGA ACGTTGGTCA CGGGGCGTTG GGCTTTACGC TGGCGCTCGG CAGCGCAGGC
TTGTTGACCG ACCTGATTGC CGGCCGCAAG CCCGCGATTT CCCCAGTGCC CTATGCGCTG
GCCGCGTGA
 
Protein sequence
MQIAVVGAGI IGISTAHALA QEGHQVTLVE RHPGPGEGTS YANGGQLSYS YVAPLAGPGV 
LSHVPGWLLR GDSPLRLKPS LDPALLRWGL RFIAACNRDR ADRTTRELLA LSFYSRARME
ALREVSPDLA FSFARRGKLV VHREAAAFES ARAQVGYQAT LGCEQHALSA DETVAHEPAL
ASVRDRIVGA IYTPDEDVAD CHQLCVGLFN RLRAMPNVML RFNTGVDALW TEGRRVRGLK
LADGEQIAAD AVVMAAGVTS ARLLSPLRID PGLYPLKGYS ISLPLGEGDV APVISVTDAA
RKIVYARIGQ TLRVAGMADL VGWSTALDTR RAQTLYDETR ALFPGAMRAN DAGADAAPWA
GMRPATPTGV PVIGASPVEG LWLNVGHGAL GFTLALGSAG LLTDLIAGRK PAISPVPYAL
AA