Gene Rpic12D_2015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2015 
Symbol 
ID8019675 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2142275 
End bp2143756 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content66% 
IMG OID644830801 
ProductDEAD/DEAH box helicase domain protein 
Protein accessionYP_002981967 
Protein GI241663607 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.73004 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGAAG CGTCAGAAGC ACCGGCCAAT GAATCGGTGA CATTCGACAG CTTCGGCCTG 
CATCCGGACG TCCTCCGCGC GCTGACCGAA AGCGGTTACA CCAAGCCCAC GCCCATCCAG
GCCGCTGCCA TTCCGGTGGT GACCGCCGGC CGCGACGTCA TGGGCGCCGC ACAAACCGGC
ACCGGCAAGA CCGCCGGTTT CTCGCTGCCG ATCATCCATA ACCTGCTGCC GGACGCCAAT
ACGAGCGCGT CGCCGGCGCG CCACCCGGTG CGGGCGCTGA TCCTCACGCC CACGCGCGAG
TTGGCCGACC AGGTGTACGA CAACGTTGCC AAGTACGCGA AGTACACGGC GTTGCGCAGC
GCTGTCGTGT TCGGCGGCGT CGACATGAAC CCGCAGACGG AGCAACTGCG CCGCGGCGTC
GAAATCCTCG TGGCAACGCC GGGCCGCCTG CTCGATCACG TGCAGCAGCG CAGCGTGAAC
CTGTCGCAGG TGCGCATGCT GGTGCTGGAC GAAGCCGACC GCATGCTCGA CATGGGCTTC
CTGCCCGACC TGCAGCGCAT CATCAACCTG CTGCCGGCAC ACCGCCAGAC GCTGTTGTTC
TCGGCGACGT TCTCGCCGGA GATCAAGAAG CTGGCCGCGA GCTACCTGCG TCATCCGCAA
ACCATTGAAG TGGCACGCAG CAACGCCACG GCAGAGAACG TCCGCCAAGT CATCTACACC
GTGCCGGACA ACCACAAGCA GGCCGCGCTC GTGCACCTGT TGAAGCAGCG TGCCGAGCAA
GGTCTGCCGC GGCAGTGCAT CGTCTTCTCC AACAGCAAGA TCGGCTGCTC GCGGCTGGCG
CGTGCGCTGG AGCGCGAAGG CATCAACGCC AACGCCATTC ACGGCGACAA GACGCAGACC
GAGCGCATGC AGACGCTCGA AGCGTTCAAG CAAGGTACCG TCGACGTGCT GGTCGCCACC
GACGTGGCAG CGCGCGGTCT GGACATCTCG CAGATGCCGT GCGTGATCAA CTTTGACCTG
CCGTTCAACG CAGAAGACTA CGTGCACCGC ATTGGCCGCA CGGGCCGTGC CGGTGCTTCC
GGTGACGCAC TGTCGCTGTT CGCGCCGGGC GATGAGCGCC TGCTGGCTGA TATCGAAAAG
CTGATCAAGC GCAATCTGCC GCGCGAACAA CTGGCCGATT TCGATCCGAC CGGCGAACAG
GCGCGTGACC GTGAGCGCCG CGAGCGCGAC GAAAAGCGTG CCCGCGGCGA GGTCCGCCGG
GCCCGTGAGC GAGATGAGCG TAACGGCGCC CGCGTGCTTG ATCACACGAT CGTGCGTCCG
GCGTTCCGTC CATCGGACGA TCCGTTTTTC AATCGCCCGT ACGAATCGTC AGTGCCGGCG
GAATCGGCGG AGGCCGCCAA GCCGGCACAG CCTGCCGGAC ACCCGCGCAG CGCCAAGCGG
CCGATTGCGG CCCTGCTCGG TGGCGTGCCG CGCAAGCGTT AA
 
Protein sequence
MSEASEAPAN ESVTFDSFGL HPDVLRALTE SGYTKPTPIQ AAAIPVVTAG RDVMGAAQTG 
TGKTAGFSLP IIHNLLPDAN TSASPARHPV RALILTPTRE LADQVYDNVA KYAKYTALRS
AVVFGGVDMN PQTEQLRRGV EILVATPGRL LDHVQQRSVN LSQVRMLVLD EADRMLDMGF
LPDLQRIINL LPAHRQTLLF SATFSPEIKK LAASYLRHPQ TIEVARSNAT AENVRQVIYT
VPDNHKQAAL VHLLKQRAEQ GLPRQCIVFS NSKIGCSRLA RALEREGINA NAIHGDKTQT
ERMQTLEAFK QGTVDVLVAT DVAARGLDIS QMPCVINFDL PFNAEDYVHR IGRTGRAGAS
GDALSLFAPG DERLLADIEK LIKRNLPREQ LADFDPTGEQ ARDRERRERD EKRARGEVRR
ARERDERNGA RVLDHTIVRP AFRPSDDPFF NRPYESSVPA ESAEAAKPAQ PAGHPRSAKR
PIAALLGGVP RKR