Gene Rpic12D_2002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2002 
Symbol 
ID8019662 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2127370 
End bp2129094 
Gene Length1725 bp 
Protein Length574 aa 
Translation table11 
GC content63% 
IMG OID644830788 
Productlipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 
Protein accessionYP_002981954 
Protein GI241663594 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02203] lipid A export permease/ATP-binding protein MsbA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.393049 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.619669 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAAGC GGTTGTGGGG CTACCTTCGC CCCGAATTGA CCGCCTTCAT CCTGGCAATG 
GTCGCCATGG GCGTGGTGGC TGCCACCGAA GGGATCATCC CCAAGGTCGT GAAGGATTTG
CTGGATCAGG GCTTCGGTGG TGAGTACGCC GGCAAGCTGT GGCAGGTGCC GGCCATGCTG
GTAGGCATTG CCGTCGTGCG CGGCATTGCG CAATTTGCGT CGACGTATCT GTTGAGCCTT
GTGTCGAACA AGGTGCTGCT GAATCTGCGG ATGAAGATGT TCGAGCGCCT CCTGCAGGCG
CCGGCTTCGT ATTATCAGCG CAATACGGCA GCGTCGATCA TCAACGCGGT CATCTTTGAG
GTCAACCAGG TGCTGCAGGT GCTCACCGGC GTGTTCATCA CACTGGTGCG CGACTCGATG
ACGGTGCTGG CGCTGCTGAT CTTTCTCTTC TATACCAACT GGCGCCTGAC GCTGGTGGTG
GCGGTGATCC TGCCGATCAT CGGCCTGCTG ATGTCGCGTA TCAACCGTCG CCTGCGCTCG
CTCAACCGCG AGAGCCAGAA CCTGACCAAC CAGGCCGCCT ATGTGGTGGA AGAGGCTGTG
GGCGGCTACA AGGTCGTCAA GCTGCATGGC GGCGAGGCGT ATGAATCGCT GCGCTTCAAT
GCCATGACGA ACCGTCTGCG TGGTTATGCC ATGCGCGTGG CTGTGGCCGG TGGGCTGAAC
CAGCCGGTGA CGCAGTTCCT GGCGGCGCTG GCGCTGTCGG TCATCCTGGC CATTGCCATG
TTGCAGGCCC AGGCCAACCA GACCACGGTC GGCGGCTTTA CCGGCTTTGT GATGGCGATG
CTGCTGCTGA TCTCGCCGCT TAAGCACCTG ACCGACGTGA ATCAGCCGCT GCAGCGCGGC
CTGACCGCCG CCGAATTCAT CTTTGGCCTG ATCGACACGC CGATCGAGCC GCAAGAAGGC
GGCAAGAAGA TCGATCGTGC CCGCGGCGAT GTCCGCTTCG ACAACGTCAC GTTCCGCTAT
GGCGAAGATG GCCGGGCAGC GCTCGACAAC GTCAACTTGC ATGTCAAGCC GGGCGAGGTC
GTCGCGCTGG TCGGGCCGTC GGGCAGTGGC AAGACCACGC TGGTGAACCT GCTGCCGCGC
TTCTTCGATC CGACCTCGGG CACGATCTCT CTCGACGGCG ATGCGCTGGC GGACCTGGCC
CTGCACGACC TGCGCCGCCA GATCGCCTTC GTGAGCCAGG ATGTGGTGCT GTTCAACGAC
ACCATCGCTG CCAACGTGGC CTATGGCGCG CGCGACGCCT CCGAGATCGA CATGGCACGC
GTGCGCCGCG CGCTCGAGGC GGCCTACCTG ACCGATGTGG TCGACAACCT CCCCGAGGGC
ATCGATACCA ATGTCGGCGA TAACGGCTCG AAGCTGTCCG GTGGACAGCG CCAGCGCCTG
GCGATTGCAC GTGCGATCTA CAAGGACGCG CCGATCCTGA TCCTGGACGA AGCGACGTCC
GCACTGGATT CGGAGTCCGA GCGCCAGGTG CAGGCCGCGC TCGAACGCCT GATGGAAGGG
CGTACGACGC TGGTGATCGC GCACCGCCTG TCGACCATCG AAAATGCCGA CCGGATCATC
GTGCTCGAGC ACGGCAAGAT TGCCGAAGCC GGCACGCACC GCGAACTCAT CGAGCGCGAT
GGGTTGTATG CTGGACTCCA TCGCATCCAG TTCGCCACCC AGTAA
 
Protein sequence
MLKRLWGYLR PELTAFILAM VAMGVVAATE GIIPKVVKDL LDQGFGGEYA GKLWQVPAML 
VGIAVVRGIA QFASTYLLSL VSNKVLLNLR MKMFERLLQA PASYYQRNTA ASIINAVIFE
VNQVLQVLTG VFITLVRDSM TVLALLIFLF YTNWRLTLVV AVILPIIGLL MSRINRRLRS
LNRESQNLTN QAAYVVEEAV GGYKVVKLHG GEAYESLRFN AMTNRLRGYA MRVAVAGGLN
QPVTQFLAAL ALSVILAIAM LQAQANQTTV GGFTGFVMAM LLLISPLKHL TDVNQPLQRG
LTAAEFIFGL IDTPIEPQEG GKKIDRARGD VRFDNVTFRY GEDGRAALDN VNLHVKPGEV
VALVGPSGSG KTTLVNLLPR FFDPTSGTIS LDGDALADLA LHDLRRQIAF VSQDVVLFND
TIAANVAYGA RDASEIDMAR VRRALEAAYL TDVVDNLPEG IDTNVGDNGS KLSGGQRQRL
AIARAIYKDA PILILDEATS ALDSESERQV QAALERLMEG RTTLVIAHRL STIENADRII
VLEHGKIAEA GTHRELIERD GLYAGLHRIQ FATQ