Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2002 |
Symbol | |
ID | 8019662 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 2127370 |
End bp | 2129094 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644830788 |
Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
Protein accession | YP_002981954 |
Protein GI | 241663594 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.393049 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.619669 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAAGC GGTTGTGGGG CTACCTTCGC CCCGAATTGA CCGCCTTCAT CCTGGCAATG GTCGCCATGG GCGTGGTGGC TGCCACCGAA GGGATCATCC CCAAGGTCGT GAAGGATTTG CTGGATCAGG GCTTCGGTGG TGAGTACGCC GGCAAGCTGT GGCAGGTGCC GGCCATGCTG GTAGGCATTG CCGTCGTGCG CGGCATTGCG CAATTTGCGT CGACGTATCT GTTGAGCCTT GTGTCGAACA AGGTGCTGCT GAATCTGCGG ATGAAGATGT TCGAGCGCCT CCTGCAGGCG CCGGCTTCGT ATTATCAGCG CAATACGGCA GCGTCGATCA TCAACGCGGT CATCTTTGAG GTCAACCAGG TGCTGCAGGT GCTCACCGGC GTGTTCATCA CACTGGTGCG CGACTCGATG ACGGTGCTGG CGCTGCTGAT CTTTCTCTTC TATACCAACT GGCGCCTGAC GCTGGTGGTG GCGGTGATCC TGCCGATCAT CGGCCTGCTG ATGTCGCGTA TCAACCGTCG CCTGCGCTCG CTCAACCGCG AGAGCCAGAA CCTGACCAAC CAGGCCGCCT ATGTGGTGGA AGAGGCTGTG GGCGGCTACA AGGTCGTCAA GCTGCATGGC GGCGAGGCGT ATGAATCGCT GCGCTTCAAT GCCATGACGA ACCGTCTGCG TGGTTATGCC ATGCGCGTGG CTGTGGCCGG TGGGCTGAAC CAGCCGGTGA CGCAGTTCCT GGCGGCGCTG GCGCTGTCGG TCATCCTGGC CATTGCCATG TTGCAGGCCC AGGCCAACCA GACCACGGTC GGCGGCTTTA CCGGCTTTGT GATGGCGATG CTGCTGCTGA TCTCGCCGCT TAAGCACCTG ACCGACGTGA ATCAGCCGCT GCAGCGCGGC CTGACCGCCG CCGAATTCAT CTTTGGCCTG ATCGACACGC CGATCGAGCC GCAAGAAGGC GGCAAGAAGA TCGATCGTGC CCGCGGCGAT GTCCGCTTCG ACAACGTCAC GTTCCGCTAT GGCGAAGATG GCCGGGCAGC GCTCGACAAC GTCAACTTGC ATGTCAAGCC GGGCGAGGTC GTCGCGCTGG TCGGGCCGTC GGGCAGTGGC AAGACCACGC TGGTGAACCT GCTGCCGCGC TTCTTCGATC CGACCTCGGG CACGATCTCT CTCGACGGCG ATGCGCTGGC GGACCTGGCC CTGCACGACC TGCGCCGCCA GATCGCCTTC GTGAGCCAGG ATGTGGTGCT GTTCAACGAC ACCATCGCTG CCAACGTGGC CTATGGCGCG CGCGACGCCT CCGAGATCGA CATGGCACGC GTGCGCCGCG CGCTCGAGGC GGCCTACCTG ACCGATGTGG TCGACAACCT CCCCGAGGGC ATCGATACCA ATGTCGGCGA TAACGGCTCG AAGCTGTCCG GTGGACAGCG CCAGCGCCTG GCGATTGCAC GTGCGATCTA CAAGGACGCG CCGATCCTGA TCCTGGACGA AGCGACGTCC GCACTGGATT CGGAGTCCGA GCGCCAGGTG CAGGCCGCGC TCGAACGCCT GATGGAAGGG CGTACGACGC TGGTGATCGC GCACCGCCTG TCGACCATCG AAAATGCCGA CCGGATCATC GTGCTCGAGC ACGGCAAGAT TGCCGAAGCC GGCACGCACC GCGAACTCAT CGAGCGCGAT GGGTTGTATG CTGGACTCCA TCGCATCCAG TTCGCCACCC AGTAA
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Protein sequence | MLKRLWGYLR PELTAFILAM VAMGVVAATE GIIPKVVKDL LDQGFGGEYA GKLWQVPAML VGIAVVRGIA QFASTYLLSL VSNKVLLNLR MKMFERLLQA PASYYQRNTA ASIINAVIFE VNQVLQVLTG VFITLVRDSM TVLALLIFLF YTNWRLTLVV AVILPIIGLL MSRINRRLRS LNRESQNLTN QAAYVVEEAV GGYKVVKLHG GEAYESLRFN AMTNRLRGYA MRVAVAGGLN QPVTQFLAAL ALSVILAIAM LQAQANQTTV GGFTGFVMAM LLLISPLKHL TDVNQPLQRG LTAAEFIFGL IDTPIEPQEG GKKIDRARGD VRFDNVTFRY GEDGRAALDN VNLHVKPGEV VALVGPSGSG KTTLVNLLPR FFDPTSGTIS LDGDALADLA LHDLRRQIAF VSQDVVLFND TIAANVAYGA RDASEIDMAR VRRALEAAYL TDVVDNLPEG IDTNVGDNGS KLSGGQRQRL AIARAIYKDA PILILDEATS ALDSESERQV QAALERLMEG RTTLVIAHRL STIENADRII VLEHGKIAEA GTHRELIERD GLYAGLHRIQ FATQ
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