Gene Rpic12D_1896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1896 
Symbol 
ID8019553 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2012457 
End bp2014631 
Gene Length2175 bp 
Protein Length724 aa 
Translation table11 
GC content63% 
IMG OID644830680 
Productpolynucleotide phosphorylase/polyadenylase 
Protein accessionYP_002981849 
Protein GI241663489 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) 
TIGRFAM ID[TIGR03591] polyribonucleotide nucleotidyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.336767 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATGT TCAATAAGGT CGTCAAAGAA TTCCAATGGG GCGGCCATAA GGTCCGCATG 
GAGACGGGTG AGATCGCCCG TCAGGCGAGC GGCGCTGTGC TGCTCGATAT GGACGACACC
GTCGTGCTCG CCACCGTGGT GGGCGCCAAG AACCCGAAGC CGGGTCAGGA CTTCTTCCCG
CTGACTGTCG ATTACCTCGA GAAGACCTAC GCCGCCGGCA AGATCCCGGG TGGCTTCTTC
AAGCGCGAAG GCCGTCCGTC GGAAAACGAA ACGCTGACCT CGCGCCTGAT CGATCGCCCG
CTGCGTCCGC TGTTCCCGGA AGGCTTCTAC AACGAAGTCC AGGTCGTGAT CCACGTGCTG
TCGATGAACC CGGAAGTGCC GGCTGACATT CCGGCGCTGG TGGCGGCTTC GGCTGCGCTG
GCTGTGTCGG GTCTGCCGTT CAACGGCCCG GTGGGCGCTG CCCGCGTGGG TTACAAGGAT
GGCCAATACC TGCTGAACCC GAATCGTGCG CAACTCGCGC ACTCGGATCT GGACCTGGTT
GTGGCCGGTA CCGAGCGTGC TGTGCTGATG GTCGAATCCG AAGCGCAGCA GCTGTCGGAA
GAAGTCATGC TAGGCGCCGT GGTGTACGGC CACGAGCAGA TGCAGATCGC CATCAACGCG
ATCCACGAAC TGGTGCGCGA CGGCGGTAAG CCCGAGTGGG ATTGGCAAGC TGCTCCGAAG
AACGAAGCGC TGGTCGCCAA GGTGTCCGAG CTGGGCCTGG CCGATCTGCA AGCCGCTTAC
CAACTGCGCC AGAAGTCGGC CCGCAGCCAG AAGCTGAAGG AAGTCTACAA GTCGGTTGCG
ACCAAGCTGG CCGAAGCCGG TGTGGAAGCC GACGGCGTGG AAGTCGACAA CATCCTGTTC
GAACTCGAAT CGAAGATCGT GCGCGGTCAG ATCCTGAACG GCGAACCGCG TATCGACGGC
CGCGACACCC GCACGGTGCG CCCGATCGAG ATCCGTTCGT CGGTGCTGCC GCGTGCCCAC
GGCTCGGCTC TGTTCACGCG CGGTGAAACG CAAGCGCTGG TGGTGGCCAC GCTCGGCACC
AAGAGCGACG AGCAGATCAT CGACGCGCTG CAAGGCGAGT ACCGTGATCG CTTCATGCTC
CACTACAACA TGCCGCCGTT CGCCACGGGC GAAACCGGTC GCGTGGGCAG CCCGAAGCGC
CGCGAAGTCG GCCACGGCCG TCTGGCCAAG CGCGCACTGA TTCCGGTGCT GCCGAAGGAC
GACGAATTCG CTTACACGAT CCGTCTGGTG TCGGAAATCA CCGAGTCGAA CGGCTCGTCG
TCGATGGCTT CGGTGTGCGG CGGTTCGCTG GCACTGATGG ATGCTGGCGT GCCCCTCAAG
GCGCACGTGG CCGGCGTGGC CATGGGCCTG ATCCTCGAAG ACAACAAGTT CGCCGTGCTG
ACCGACATCC TGGGTGACGA AGATCACCTG GGCGACATGG ACTTCAAGGT CGCGGGTACC
GACGCAGGTA TCACCGCGCT GCAGATGGAC ATCAAGGTGC AGGGCATCAC CAAGGAAATC
ATGCAGGTGG CGCTGGCGCA AGCCAAGGAA GGCCGTCTGC ACATCCTGGG CAAGATGCGG
GCCGCCATGG GCGGCGCTCG CACCGAGCTG TCGGAGCACG CTCCGCGCAT GATCACCGTC
AAGATCAATC CGGAGAAGAT CCGCGACGTG ATCGGCAAGG GCGGTTCGAC CATCCAGGCG
CTGACCAAGG AAACCGGCTG CACGATCGAC ATCCAGGAAG ACGGCACGAT CACCATCGCG
TCGACTTCGT CGGAAGGCAT GGCCGAAGCC AAGCGTCGCA TCGAAGGCAT CACGGCCGAG
GCCGAAGTGG GCAAGATCTA CAACGGTACG GTTCTGAAGC TGCTGGACTT CGGCGCGATC
GTGAACATCC TGCCGGGCAA GGACGGTCTG CTGCACATCT CGGAAATCGC CAACGAGCGC
GTGAACCAGG TTTCCGACTA TGTGAAGGAA GGCCAGGCCG TGCGCGTGAA GCTGCTGAGC
ACCGACGAGA AGGGCCGCAT GCGTCTGTCG ATCAAGGCTG CCAAGGCTGA AGAAGGCGAC
GTGCCTGCCG CTGCACCGCA AGCCCCGGGT GCTGGCGACG CTGCCTCGCA GCAACAACAG
CAACAACAGC AGTAA
 
Protein sequence
MTMFNKVVKE FQWGGHKVRM ETGEIARQAS GAVLLDMDDT VVLATVVGAK NPKPGQDFFP 
LTVDYLEKTY AAGKIPGGFF KREGRPSENE TLTSRLIDRP LRPLFPEGFY NEVQVVIHVL
SMNPEVPADI PALVAASAAL AVSGLPFNGP VGAARVGYKD GQYLLNPNRA QLAHSDLDLV
VAGTERAVLM VESEAQQLSE EVMLGAVVYG HEQMQIAINA IHELVRDGGK PEWDWQAAPK
NEALVAKVSE LGLADLQAAY QLRQKSARSQ KLKEVYKSVA TKLAEAGVEA DGVEVDNILF
ELESKIVRGQ ILNGEPRIDG RDTRTVRPIE IRSSVLPRAH GSALFTRGET QALVVATLGT
KSDEQIIDAL QGEYRDRFML HYNMPPFATG ETGRVGSPKR REVGHGRLAK RALIPVLPKD
DEFAYTIRLV SEITESNGSS SMASVCGGSL ALMDAGVPLK AHVAGVAMGL ILEDNKFAVL
TDILGDEDHL GDMDFKVAGT DAGITALQMD IKVQGITKEI MQVALAQAKE GRLHILGKMR
AAMGGARTEL SEHAPRMITV KINPEKIRDV IGKGGSTIQA LTKETGCTID IQEDGTITIA
STSSEGMAEA KRRIEGITAE AEVGKIYNGT VLKLLDFGAI VNILPGKDGL LHISEIANER
VNQVSDYVKE GQAVRVKLLS TDEKGRMRLS IKAAKAEEGD VPAAAPQAPG AGDAASQQQQ
QQQQ