| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1854 |
|---|
| Symbol | |
|---|
| ID | 8019510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1972752 |
|---|
| End bp | 1974011 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644830637 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_002981807 |
|---|
| Protein GI | 241663447 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.505719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0689875 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTCG ATTACACGCC CAAGGTCAAG GAAATGCAGG CACGCCTGCT TGAATTCTTC
GACCAGCACA TCTACCCGAA CGAGCACCGC TTCCACGAAG AAATCGAGGC CAACCGCCGC
GCCGGCAATG CGTGGATCCC GACCAAGGTG ATCGAAGAAC TCAAGCCGCT GGCACGCAAG
GCCGGGCTGT GGAACCTGTT CCTGCCGCGT TCGCCGCGCG CGCCCGAAGG GCTGTCGAAC
CTCGAATACG CGCCGCTGTG CGAGATCATG GGCCGCGTGC CCTGGGCGCC GGAAGTGTTC
AACTGTTCCG CGCCCGACAC CGGCAACATG GAGACGCTGG AGCGCTACGC GTCCGAAGAA
CTGAAAGACC GCTGGCTCGA ACCGCTGCTG CGCGGTGAAA TCCGCTCAGC CTTCCTGATG
ACCGAACCGG CCGTGGCGTC GTCGGACGCC ACCAACATCG AATGCCGCAT CGAGCGCCAG
GGCGACGAAT ACGTCATCAA CGGCCGCAAG TGGTGGTCGT CGGGCGCCGG CGACCCGCGC
TGCGCCGTCT ACATCGTCAT GGGCAAGACC AACCCGGATG CCGGCCGCCA CGAGCAGCAA
TCGATGATCG TGGTGCCGGC CAACGCGCCG GGCATCACGG TCATGCGTCC GCTGTCGGTG
TTCGGTTACG ACGATGCGCC GCACGGCCAC ATGGAAGTCG ACCTGAAAGA CGTGCGCGTG
CCGGTGGGCA ACATCCTCCT GGGTGAAGGC CGCGGCTTCG AAATCGCTCA AGGCCGCCTG
GGCCCGGGCC GCATCCACCA CTGCATGCGC AGCATCGGCG TGGCCGAGCG TGCGCTGGAG
CTGATGTGCA AGCGCCTGTC GTCGCGCATC GCATTCGGCA AGGCCATCGC ACAGCACAGC
GTCTGGCACG AACGCATTGC CGAAGCGCGC TGCATGATCG AGCAGGCCCG TCTGCTGACG
CTCAAGGCCG CATACATGAT GGACACCGTC GGCAACAAGG TCGCCAAAGC CGAAATCGCG
ATGATCAAGG TCGTGGCCCC GAACATCGCC TGCCAGATCG TCGACTGGGC GATCCAGGCA
CACGGCGGCG GCGGCGTGTC GGGGGATTTC CCGCTGGCGT CGGCCTATGC GCACCAACGC
ACGCTGCGCC TGGCCGATGG CCCGGACGAA GTGCACCGCG CGGCCATCGC CAAGCTGGAA
CTGGCCAAGC ATCTGCACCT GAAAGACGTG GTCGACATGC CGGTCACACG CGGCGCCTGA
|
|---|
| Protein sequence | MNFDYTPKVK EMQARLLEFF DQHIYPNEHR FHEEIEANRR AGNAWIPTKV IEELKPLARK
AGLWNLFLPR SPRAPEGLSN LEYAPLCEIM GRVPWAPEVF NCSAPDTGNM ETLERYASEE
LKDRWLEPLL RGEIRSAFLM TEPAVASSDA TNIECRIERQ GDEYVINGRK WWSSGAGDPR
CAVYIVMGKT NPDAGRHEQQ SMIVVPANAP GITVMRPLSV FGYDDAPHGH MEVDLKDVRV
PVGNILLGEG RGFEIAQGRL GPGRIHHCMR SIGVAERALE LMCKRLSSRI AFGKAIAQHS
VWHERIAEAR CMIEQARLLT LKAAYMMDTV GNKVAKAEIA MIKVVAPNIA CQIVDWAIQA
HGGGGVSGDF PLASAYAHQR TLRLADGPDE VHRAAIAKLE LAKHLHLKDV VDMPVTRGA
|
|---|
| |