| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1778 |
|---|
| Symbol | |
|---|
| ID | 8019434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1899463 |
|---|
| End bp | 1900998 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830562 |
|---|
| Product | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit |
|---|
| Protein accession | YP_002981732 |
|---|
| Protein GI | 241663372 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
|---|
| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.525314 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTCA TTCGTCAAGA AGACCTCATC CAGAGCGTCG CCGACGCCCT GCAGTACATC
AGCTATTACC ACCCGATGGA CTACATCACT GCTCTGGGCC GCGCCTATGA GCAGGAACAG
AGCCCCGCAG CCAAGGATGC CATCGCGCAG ATCCTGACCA ACAGCCGCAT GTGCGCAGAA
GGCAAGCGCC CGATCTGCCA GGACACCGGC ATCGTCACCG TGTTCCTGAA GGTCGGCATG
AACGTGCGCT GGGGAAGCGA AAACGGCAAC GCCACGATGA GCCTGGAAGA CATGGTCAAC
GAAGGCGTGC GCCGCGCGTA CAACGACGTC GACAACAAGC TGCGCGCAAG CGTGCTGGCT
GATCCGGCCG GCAAGCGCAC CAACACGAAG GACAACACCC CGGCCGTGAT CAACATGTCG
ATCGTGCCGG GCGACACCGT GGACGTGATC GTCGCAGCCA AGGGCGGCGG CTCGGAGGCC
AAGTCGAAGT TCGTGATGCT GAATCCGTCG GACTCGATTG TTGACTGGGT GCTCAAGACC
GTGCCGACCA TGGGCGCCGG CTGGTGCCCG CCGGGCATGC TGGGCATCGG CATTGGCGGC
ACGGCTGAAA AGGCCATGCT GCTGGCCAAG GAAGCCCTGA TGGAGCCGAT CGACATTCAA
GACCTGATCG CCCGCGGCCC CAGCAACCGC GCAGAAGAAC TGCGCATCGA GCTGTACGAG
AAGGTCAACG CGCTGGGCAT TGGCGCGCAG GGCCTGGGCG GCCTGGCCAC CGTGCTTGAC
GTGAAGATCC TGGACTACCC GACGCACGCG GCCAACCTGC CCGTCGCCAT GATCCCGAAC
TGCGCGGCCA CGCGTCACGC GCACTTCACG CTGGACGGCA GCGGCGTTGC CAAGCTGGAA
GCGCCAGACC TGTCGCAATG GCCGAAGGTC GAATGGGCAC CGAATACGGA AACGTCGAAG
CGCGTGGATC TGAACACGCT CACGCCGGAA GAAGTCGCCT CGTGGAAGCC GGGCCAGACG
CTGCTGCTCA ACGGCAAGAT GCTGACCGGC CGCGACGCCG CACACAAGCG CATTGCAGAC
ATGCTGGCCA AGGGCGAGAA ACTGCCGATC GACTTCACCA ACCGCGTGAT CTACTACGTC
GGCCCGGTTG ACCCGGTGCG GGATGAAGTC GTGGGCCCGG CAGGCCCGAC CACCGCCACC
CGCATGGACA AGTTCACCGA GACGATGCTC GCCCAGACGG GCCTGATCGC CATGGTAGGC
AAGGCCGAGC GCGGCCCAGT CGCCATCGAG TCCATCAAGA AGCACAAGTC GGCTTACCTG
ATGGCCGTGG GCGGCGCGGC GTACCTGGTG TCGAAGGCCA TCCGAGGTTC GAAGGTGCTG
GCGTTCGAAG ACCTGGGCAT GGAAGCGATC TATGAATTCG ACGTGAAGGA CATGCCTGTC
ACCGTCGCCG TGGACAGCTC GGGCACGTCG GTCCACAAGA CCGGCCCGGC GGAATGGCAG
GCGAAGATCG GCAAGATTCC GGTCGCAGCG GGCTGA
|
|---|
| Protein sequence | MTVIRQEDLI QSVADALQYI SYYHPMDYIT ALGRAYEQEQ SPAAKDAIAQ ILTNSRMCAE
GKRPICQDTG IVTVFLKVGM NVRWGSENGN ATMSLEDMVN EGVRRAYNDV DNKLRASVLA
DPAGKRTNTK DNTPAVINMS IVPGDTVDVI VAAKGGGSEA KSKFVMLNPS DSIVDWVLKT
VPTMGAGWCP PGMLGIGIGG TAEKAMLLAK EALMEPIDIQ DLIARGPSNR AEELRIELYE
KVNALGIGAQ GLGGLATVLD VKILDYPTHA ANLPVAMIPN CAATRHAHFT LDGSGVAKLE
APDLSQWPKV EWAPNTETSK RVDLNTLTPE EVASWKPGQT LLLNGKMLTG RDAAHKRIAD
MLAKGEKLPI DFTNRVIYYV GPVDPVRDEV VGPAGPTTAT RMDKFTETML AQTGLIAMVG
KAERGPVAIE SIKKHKSAYL MAVGGAAYLV SKAIRGSKVL AFEDLGMEAI YEFDVKDMPV
TVAVDSSGTS VHKTGPAEWQ AKIGKIPVAA G
|
|---|
| |