| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1687 |
|---|
| Symbol | |
|---|
| ID | 8019340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1795420 |
|---|
| End bp | 1797642 |
|---|
| Gene Length | 2223 bp |
|---|
| Protein Length | 740 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830469 |
|---|
| Product | putative ribonuclease G and E |
|---|
| Protein accession | YP_002981642 |
|---|
| Protein GI | 241663282 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.696506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.229543 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCATGG ACTACCCCTC GCCACTGCCC GGCGTCATCA TCTTCGTGCA CGGCGTCAAC
TCCACCGGCG AGTGGTTCGA CACTGCAGAA GAGGGCTTGT GCCGTGGCCT GAACGCCCGC
CTACAACGCA AGGACGAACA CGTCTTCCGC GTCAAGGGCA GCGGCCAGCT CAAGCCCGCC
CGCTACATGG GCGAACTCAC CGAGGATGGT TACATCCATG ATGACCTCAG CGCTGCCACC
TTCGTCGCCG ACGGCGGCTA CAGCCCCGTC ATCCGCTTTC GCTGGGGCTA CAAAGCCAGC
CCGAAAGAAG CCAACAGAGA AGGCGGCAAC ATCCTGCTCG ACGAAAAAAA TGCCTGGGGC
GGCGGCCCCT TCGTCAACGG CTGCTCCGCC TTGCCCGACC TGTTCGCCAA AGGCACCGAC
GCCGAACTCA TCTTCGGCGC CCTCTCGCTC ACCCACCTGC AAACCAGCGA CCGCCAGGTC
TACAGCGCCC CCGCGCGCCA CTACCAGGCC TTCGCCGCCT GGCGGCTAGC CAAGCTCGTT
TCCCGCATCC GCGAGCTGCA CCGGCAAATC AACCACTGCG GCACCACCAA CCAAGATTGC
CCCATTACCA TCGTCTGCCA CAGCCAAGGC AACATGGTCG GCATCACCTC CGCCTACTTT
GGCGCCTATC ACCCCGAATT CAAAGGCCTG GGTGTCGCCG ACAACTACGT CCTGGCTTGT
GCCCCCTACA GCCTGCGCGA CAACAAGATC GACGGCAGTA CCCAATACGA CAAAGCGCTC
AACCAAGGCC GCGTCACCGT TGCTGCTCGC CAAGCCGGGC TCAGAGGCTT CTTCGACATC
GTGCGCCACT TTGGCGAAGA CCGCGCCCAG CACTACGCCC CTGACTTCGT CACCGAATGG
GCCTTCAACC GCAATCCGCA GAACGGCGAA GCTGCGTGCA CAGCCGAACA AGACTGCAAG
GGCCGCGACA CCCGCGCCCG CGCCTTCCTG TATTGCAGCC CGCATGATCG CGTCATCTCC
GTGTCCACCG TGCAAGGCAT GGGCTGGCTG GGGCTGGACA AAGCCGACTT CAACGCCGTT
GGCGCCCAAG GCATGCTCTA CCAACGCGTC TGGGCCGAAG TCAAACCGGG CATCGCCTAC
AAAGTGGGCG CCGCCCCCGG CACCGCATAC CACTACTGGA ACCACACCAT CGGCGCCAAC
CCCGAGACCA ACATCTTCTG GGACCCTGAC TCCGAACGCG TGAGCGTGCA GTTCCGCAAG
ATTTGGGGCG ACGACCGCAA AAGCTGGGGC GGCAAAACAC TGGGCAGCAT CTTTGGTTTC
TTTGCGGGCA CGGGTTCGCT GATCGCCAGC GTGTTTAGCA ACATCAGCAA GGTCAATGGC
GTGCCTCCCA AAGACTGGGT CGTGCACATC AACGCCCCCG AAGTCCCCAG CACAGGCATC
ACCCCACGCG CGCGCCGCCT GCCGCACGGC ACAGGCGAGC TCAAAGCCGG CGAAACACGC
AGCCCCGACG GCCACATCCT CGGCCCCTTC AACGTCCACT ACGAATCCGC GCGCGACGCC
CTCAACCGCA AGCGCGAGTT CCCCAAAGAC AGCGATCCCT ACGCCGCCCA ACGCCCCACC
GGGCACGGTA ACGCGCAGAG CGAAGCCGCC ATGCGCTACG ACCAGAACGC CGGCCTGCGC
CAGCGCGCCC GGCGCCACGC CTACGACGAA GAGGGCAAGC TCAACAAGGA CGCCCCCTTT
AACGACCAGG ACATCCAGAA GATGGATGCC GCCCGGCACC ACGAACTGCG CGGTACCGCC
TTGGGCAACT ACATCGAATC CCAGCGCATC AAGCAGTTTG AGGAAGGCGA CCGCCAGCAG
CCGAGCAACC ACTCCACCAT CCTCACCAAC CCCGAGCATG CCGAGCACGT GCTGGCCTAT
GACGTGGACG TGGGGGTGTG CTTGTTCGAT GCGCAGGATA TGGCCCAATT CCGGCGCATG
GCGGATTGGC GCTGGTGTAA GCCGCAGCCT AGGAACGGCG ACGAATACCC GGCGGGGCGG
GACCCTGCGA AGGACAACGA ATACGAGTAC TACCACTCCG AACAAGCCAC GCTTGAAGGG
AAACCACTGG AAGAGGACCC CCGCTTCGTC GAATCCAAAG GCGCCGTCGC CGCCATCCAG
ATCCCGGGCG AGCGCTACGT TCGCCCGCCG ATGCCCGAGC CGCCCTTGCA CAGTGGAGGC
TAA
|
|---|
| Protein sequence | MVMDYPSPLP GVIIFVHGVN STGEWFDTAE EGLCRGLNAR LQRKDEHVFR VKGSGQLKPA
RYMGELTEDG YIHDDLSAAT FVADGGYSPV IRFRWGYKAS PKEANREGGN ILLDEKNAWG
GGPFVNGCSA LPDLFAKGTD AELIFGALSL THLQTSDRQV YSAPARHYQA FAAWRLAKLV
SRIRELHRQI NHCGTTNQDC PITIVCHSQG NMVGITSAYF GAYHPEFKGL GVADNYVLAC
APYSLRDNKI DGSTQYDKAL NQGRVTVAAR QAGLRGFFDI VRHFGEDRAQ HYAPDFVTEW
AFNRNPQNGE AACTAEQDCK GRDTRARAFL YCSPHDRVIS VSTVQGMGWL GLDKADFNAV
GAQGMLYQRV WAEVKPGIAY KVGAAPGTAY HYWNHTIGAN PETNIFWDPD SERVSVQFRK
IWGDDRKSWG GKTLGSIFGF FAGTGSLIAS VFSNISKVNG VPPKDWVVHI NAPEVPSTGI
TPRARRLPHG TGELKAGETR SPDGHILGPF NVHYESARDA LNRKREFPKD SDPYAAQRPT
GHGNAQSEAA MRYDQNAGLR QRARRHAYDE EGKLNKDAPF NDQDIQKMDA ARHHELRGTA
LGNYIESQRI KQFEEGDRQQ PSNHSTILTN PEHAEHVLAY DVDVGVCLFD AQDMAQFRRM
ADWRWCKPQP RNGDEYPAGR DPAKDNEYEY YHSEQATLEG KPLEEDPRFV ESKGAVAAIQ
IPGERYVRPP MPEPPLHSGG
|
|---|
| |