Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1683 |
Symbol | |
ID | 8019336 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1790070 |
End bp | 1790609 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644830465 |
Product | type VI secretion protein, VC_A0107 family |
Protein accession | YP_002981638 |
Protein GI | 241663278 |
COG category | [S] Function unknown |
COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0225402 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGTTG TGAACAGTTC GCAGAAATTC ATCGCGCGCA ACCGCGCACC GCGCGTCCAG ATCGAGTACG ACGTCGAAGT CTACGGCTCG GAGAAACGGA TCGAGTTGCC TTTCGTGATG GGCGTGTTGG CCGACCTGTC CGGGAAGCCG GCTGAGCCGC TGCCTTCGGT GGCCGATCGC AAGTTCCTCG AAATAGATAT CGACAACTTC GACGAGCGCA TGAAAGCCAT GAAGCCGCGC GTTGCGTTTG CTGTGCAGAA CACGCTCACC GGCGAAGGCC AACTGATGGT CGACATGACC TTCGAGAGCA TTGAAGACTT CTCGCCCGCC GCGGTCGCCG GCAAGGTAGA CGCGCTTAAG CAACTGCTCG AAGCCCGGAC GCAGCTGGCC AACCTGCAGA CCTACATGGA CGGCAAGTCC GGCGCCGAGT CGCTCATCAA CCAACTGCTG CAAGACCCGG CCCTGCTGCA AGCACTGGCC AAGGCACCGA AGCCCGAGGT GACGCCGGTT CAAGCCGGGA CCGAGCAGAC CGACGCCTGA
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Protein sequence | MSVVNSSQKF IARNRAPRVQ IEYDVEVYGS EKRIELPFVM GVLADLSGKP AEPLPSVADR KFLEIDIDNF DERMKAMKPR VAFAVQNTLT GEGQLMVDMT FESIEDFSPA AVAGKVDALK QLLEARTQLA NLQTYMDGKS GAESLINQLL QDPALLQALA KAPKPEVTPV QAGTEQTDA
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