| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1682 |
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| Symbol | |
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| ID | 8019335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 1788527 |
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| End bp | 1790020 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644830464 |
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| Product | type VI secretion protein, EvpB/VC_A0108 family |
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| Protein accession | YP_002981637 |
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| Protein GI | 241663277 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.509952 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0159997 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTCCG CACAACAACA GAAACAACAG AGCGTCGCAA CGGCTGATCA GTCCGACTTT
CCGGCGCTAC TGAACCGCGA GTTCTCCCCC AAGACCGACC AAGCCCGCGA GGCTGTTGAT
CTGGCCGTCC GCACCCTGGC CGAGCAGGCG CTCGCCAGCA CCTTTACCAT GAGCGACGAT
GCCTACAAGA GCATCGAAGC CATCATCGGC GCCATCGACT CCAAGCTCTC CGAGCAGATC
AACCTAATCC TGCACAACGA AGACTTCCAG AAGCTCGAAT CCGCTTGGCG TGGTCTGCAT
CACCTAGTCT CCAACACCGA GACGGATGAG AAGTTACGCA TCCGTGTAAT GGACGTCTCC
AAGGATGAAC TGCGCCGCAC GCTGCGCCGC TACAAGGGCA TCGGCTGGGA CCAAAGCCCG
TTCTTCAAGC GCATCTATGA AGAAGAGTAC GGCCAACTCG GCGGCGAACC GTATGGCTGC
CTGGTTGCGG ACTATTACTT CGACCACACA CCGCCGGATG TGGAGCTGCT CGGTTCGTTG
GCCAAGATCT CCGCCGCCGC ACACGCCCCG TTCATTGCTG GTGCATCGCC ATCGGTGCTG
CAAATGGATT CGTGGCAAGA GCTGGCCAAC CCGCGTGATC TGTCCAAGAT CTTCCAGAAC
CTGGAGTACG CCCCGTGGAA CAGCCTGCGC AACTCGGAAG ATGCCCGCTA CGTGGGTCTG
GCCATGCCGC GTTTCCTCTC GCGCCTGCCG TACGGAATCA AGACCAACCC GGTCGATGCC
TTCGACTTTG AAGAGGACAC CGACGGTGCC GACCACCGCA AGTACGTGTG GAGCAACGCG
GCGTACGCCA TGGCCGTCAA CATCAACCGC TCGTTCAAGC AATACGGCTG GTGCACGCTG
ATTCGCGGCG TGGAGAGTGG CGGCGTGGTT GAGAACCTGC CGTGCCACAC CTTCCCGACG
GATGACGGTG GCGTTGACAT GAAGTGCCCG ACCGAGATCG CCATCTCAGA CCGTCGCGAA
GCCGAGCTGT CGAAGAACGG GTTCATCTCG CTGGTGCATC GCAAGAACAC CGACTACGCC
GCCTTTATCG GCGCGCAGTC GCTGCAAAAA CCGGCCGAGT ACTACGACGC AGATGCCACG
GCTAACGCCA ACCTGTCGGC ACGTCTGCCG TACCTGTTCG CCTGCTCGCG CTTCGCGCAC
TACCTGAAGT GCATCGTGCG CGACAAGATC GGCGCGTTCA AGGAGCGCGA GGATATGCAG
CGCTGGTTGA ACGAATGGGT CATGAACTAC GTGGACGCCG ATCCGGCCAA CTCCTCGCAA
GAGACCAAGG CACGCCGCCC GCTGGCTGCC GCGGAAGTGG TGGTCGAAGA GCAGGAAGGC
AACCCGGGCT ACTACAGCGC CAAGTTTTTC CTGCGTCCGC ACTTCCAACT GGAAGGCCTG
ACCGTCTCGC TGCGCTTGGT GGCGCGACTG CCGTCGGTTA AGGAAGCTGC GTAA
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| Protein sequence | MASAQQQKQQ SVATADQSDF PALLNREFSP KTDQAREAVD LAVRTLAEQA LASTFTMSDD
AYKSIEAIIG AIDSKLSEQI NLILHNEDFQ KLESAWRGLH HLVSNTETDE KLRIRVMDVS
KDELRRTLRR YKGIGWDQSP FFKRIYEEEY GQLGGEPYGC LVADYYFDHT PPDVELLGSL
AKISAAAHAP FIAGASPSVL QMDSWQELAN PRDLSKIFQN LEYAPWNSLR NSEDARYVGL
AMPRFLSRLP YGIKTNPVDA FDFEEDTDGA DHRKYVWSNA AYAMAVNINR SFKQYGWCTL
IRGVESGGVV ENLPCHTFPT DDGGVDMKCP TEIAISDRRE AELSKNGFIS LVHRKNTDYA
AFIGAQSLQK PAEYYDADAT ANANLSARLP YLFACSRFAH YLKCIVRDKI GAFKEREDMQ
RWLNEWVMNY VDADPANSSQ ETKARRPLAA AEVVVEEQEG NPGYYSAKFF LRPHFQLEGL
TVSLRLVARL PSVKEAA
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