Gene Rpic12D_1681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1681 
Symbol 
ID8019334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1787905 
End bp1788390 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content60% 
IMG OID644830463 
Producttype VI secretion system effector, Hcp1 family 
Protein accessionYP_002981636 
Protein GI241663276 
COG category[S] Function unknown 
COG ID[COG3157] Hemolysin-coregulated protein (uncharacterized) 
TIGRFAM ID[TIGR03344] type VI secretion system effector, Hcp1 family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.666792 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0213097 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACAGG ACATCTTCCT GAAGATCAAT GGCATCGACG GCGAATCTCA AGACTCGTCG 
CACAAGAACG AAATCGAAGT GCTGGTGTGG GACTGGAACA TCGAGCAACA GTCGAACATG
CACGCCGGCA GCGGCGGCGG TGCCGGCAAG GCCACCGTGT CGGACCTGTC GTTCGAGCAC
TACGTTGACC GTGCATCGCC CAACCTGATG AAGTACTGCC TGACTGGTAA GCACATCGAC
CAAGCCACGC TGGTAGTGCG AAAGGCCGGC GGCAACCCGC TGGAGTACCT GAAGCTCACG
ATGAGCGATG TGATCGTGAC CAGGGTGGCA CCGCGTGGTG CCGCGACCGA CGAGGCACGT
GTGCGCGAGA AGGTGGCGCT GTCGTTCTCC AAGGTCAAGC AGGAGTACAT GGTGCAGAAC
GCCCAAGGCG GTAGCGGTGG GGCGATCACG GCAGGCTACG ACATCAAGGG CAATAAGGAA
GCCTAA
 
Protein sequence
MAQDIFLKIN GIDGESQDSS HKNEIEVLVW DWNIEQQSNM HAGSGGGAGK ATVSDLSFEH 
YVDRASPNLM KYCLTGKHID QATLVVRKAG GNPLEYLKLT MSDVIVTRVA PRGAATDEAR
VREKVALSFS KVKQEYMVQN AQGGSGGAIT AGYDIKGNKE A