Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1679 |
Symbol | |
ID | 8019332 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1783898 |
End bp | 1787044 |
Gene Length | 3147 bp |
Protein Length | 1048 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644830461 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_002981634 |
Protein GI | 241663274 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00352314 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGGCGCAG CAGAGCAGAT TTCCAACTTG GTGGGCAGCC ACCGCACAGT CAAAGCGAAA AGCAGCGCGA TTCCCGAGTT GCTGGGCGCG CCGCAGTTGG AATTCGTGCG CGTCACCGGT CGCGAAGCCC TGAGCGAATT GTTCACCTAC ACAGTGGATC TGCGCCCCGT CTCGCTCGCC GCCGATCAGT CCATGCTTGA ATCCGATCTC GATGCCGCTA TCGGCCAAGC GATGACGTTG TCGATTGAAC TCGATGGCAT GGGCGATGGG GTGCTGGGCG GCATTGGCGC GGGCGAGCGC CAGATCACCG GCCTGATCAC CGCCGTCGAG TTGATCGGCG GCGTGGACAA TAATCGCCTC TACCGCTACA CCCTGCGCCC TTGGCTCTGG CTAGCGACGC AGACCTCCGA CTACAAACCA TTCCAGAACA AGTCCGTCAT CGACATCCTC GATGAAGTGC TGGCCGACTA CCCGTACTCC GTCGACAAAC GTCTGGACAC CAGTGTCTTC CCCAAGCTGA TTTGGGAAGT GCAGCACGGC GAAACCGACG CCCTCTTCAT CCAACGCCTC ACTGAAGAAT GGGGCATCAC CTACTTCTTC GAACACGACG GTGGTCACCA CCGACTCGTG CTCGTCTCCG AATCCGGCGC CTGGCGTCAA TTCCCCAGCG AGGCCTATCA CACGCTGCCC ATTTACCCGC AAGGCTTCAA GGTAGACCAA GAGCACCTGA CACGCTTCGA GCCAATCAAC CGCCTGCGCA CCGGCAAGAT CACCCTCAAA GACTACGACC CGCGCCAGCC CAGGGCCGAC CTCACCACCG GCGACAGCCT CCCGCGTAAC ACATTGTTCT CCGAGTTCGA GCGCTACGAA TACGAACCCG CCGTCTACAA CAGCCGCGAA GCCGGCAACT TCCGCGCCCG CATCCGCATG GAAGAGCGCC GCGCTAAAGG CCGGCGCACC CGTGGCACCG GTGCATTGCG TGGCGTCGCC GCTGGCCACA CTTACCAGAT CGCCAACCAC GACCACGACG CACTCAACCG TGAATGGCTC ATCATCGGCA CCGAGTTCAT GCTCGAAGAC GTGGGCCTGA AGGGTGGCAG CACCCAACGC TACGCCTGCC ATGTCCGATT TGAAGCCCAC CCCACTGACG AAGTCTTCCG CCCACCGCTG ACGGCGCCCA AGCCACGCGT GCAAGGCATC CAGCGCGCCG TGGTCACCGG CCCCGAGAAC CAGGAAGTCT GGTGCAACGA CCACGGCTAC GTCAAAGTCC AATTCGAATG GGACCGCTAC GGCCAGTATG ACGAAAATTC GTCCCCCTGG ATTCGCGTCT CCAACGGTTG GTCTGGCGAC CAGTTCGGCG CCATGCACGT GCCGCGCATC CGGCAGGAAG TGCTGGTCGA CTACCTCAAC GGTGATCCGA ACACACCCAT CATCATCGGG CGCGTTCCCA ACCAGCTCAA TACACCCCCG TGGAGTCTGC CAACGCAGCA CGCCCTGTCG GGTGTCGCCA GCAAGGAGCT GTTCGGACAG CGGCGCAACC ACCTGTTGAT GGACGACACG CAAGGCGAGA TTCAAGCCCA ACTGTCGTCC GACCACCAGA CCAGCCAGCT CAACCTCGGG TACCTCACCA GCGTCCGCGG CAACCCAGGG CGCAAAGACC AACGCGGTGA AGGTTTTGAC CTGCGTACCG ATGGCCACGG CAGTGTGCGT GGTGGCAAGG GCCTCTTCCT GACCGCAGAG GGCCAGATCA ACGCCGTGGG TGGTCACCTC TCGCGCGACG AATTCATCCG CTGCATGAAA GCCGCACTGG AAGTTGCCGA ATCATTGGGT GGCTACAGCA GCCAGCACGA AGCACCAAAG ACTGACACCG ATCCACAAAG CAGTCTGGCC AAGGCCGTCC AGGAATGGGA TGCGGGAGCC AACGATCACA AGGAAGCGCC GGGGCAGGGC GGCCAACCGC TGCTGGGTGC GTACGCTCCC GCTGGTATGG CCTTCGCCAG CCCCCAAACC ATCACCAGCT ACGCCGGCAA GCACATCGAC ACCGTCTCCA AGCTCAACCA GCAGGTCACG GCCGGTCAGC AATACGTTGT CAATGGCGGT ACCGGGATCA GCCTGTTTGC GCACAGTGGA TTCTGGAAAG GTATCGCCCA CCGCGGCAAG CTCATTCTGC AATCACAGAG TGATGGCATG GATTTCAACG CCAAGACCGA CGTAGTGGTG ACTGCTACCG ACGGCAGCAT CTTGGGTAAT GCCAAGAATG GCATCACGCT CATGAGTGGC AATGCGGGCA TTCGTATCGC CGACGGGTGT GTGGACATCT TTGGGCCGAC ACGCGTGCAT GCGCATACGG GGAACTTTGA TGTACCGGGG CCTCAGGGTA TCCAAGGAGC ACTGCCGCAG TTCGACTCGG GGGACACCGG GCGCAAGTTC CGCCTGATCC GGCCGGCGGA TAGCCTGCCG GTAGCTGGTA TGGCCTATCA AATCGTCAAG CAAGACGGCA GCGTCGTAAA GGGCGTTACC AATAGTCTGG GCGAAACCGG TCTGCACGAA TCTGAAGCAG CGGAGGCGCT GTCAATCTCT TTTGGTGACG AACTGCCGAG CCAGGAAGCA AGAATGGTCC GCACGTCGTT GACGCTGGGC GACAGCAATC GGAAGAGTGA CAGCGGATAC CAATACAAGC TCAAACAGTC GACCTATCAG ATCAAGCAGG CCGCCTACTT GCCTATCGAG GGTGTTGGTG CTCTCGCCAC GTTCGTGGTC CACGGAAACC TCAACCTGAA AACCGGTGAG TCCGGCGATT CTCTGTGGGT GAACGGCATG GGGACTACCA GCGCCAGCAG CAAGGGCAAG ACCATCTTCT TTGCCAAGGC ATCGCTACGC ATCAACGGTA TCGATGGAGC CGCTACCCCT TTGGCCACGA ACAATGAAGC AGGCTTCTGG CCAAAGGATG GCTCTCTTCC TATTGGCTCT GCAACCCTGC GGCTTCCGCG CCCCGATCAG TCACTCAAGG TCGAGTTGGT GCTTAGTGGG GGTTACGTCT ATGAGGGGGA CGAAGGCCGC TCCGTGCCGA TTCCGCCTCA AGGTTCTATC GTCATACCGA TCGGAATTGT CTACGCAGAA GGAAAGAGCG GGGGTATCAA TGTCTAG
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Protein sequence | MGAAEQISNL VGSHRTVKAK SSAIPELLGA PQLEFVRVTG REALSELFTY TVDLRPVSLA ADQSMLESDL DAAIGQAMTL SIELDGMGDG VLGGIGAGER QITGLITAVE LIGGVDNNRL YRYTLRPWLW LATQTSDYKP FQNKSVIDIL DEVLADYPYS VDKRLDTSVF PKLIWEVQHG ETDALFIQRL TEEWGITYFF EHDGGHHRLV LVSESGAWRQ FPSEAYHTLP IYPQGFKVDQ EHLTRFEPIN RLRTGKITLK DYDPRQPRAD LTTGDSLPRN TLFSEFERYE YEPAVYNSRE AGNFRARIRM EERRAKGRRT RGTGALRGVA AGHTYQIANH DHDALNREWL IIGTEFMLED VGLKGGSTQR YACHVRFEAH PTDEVFRPPL TAPKPRVQGI QRAVVTGPEN QEVWCNDHGY VKVQFEWDRY GQYDENSSPW IRVSNGWSGD QFGAMHVPRI RQEVLVDYLN GDPNTPIIIG RVPNQLNTPP WSLPTQHALS GVASKELFGQ RRNHLLMDDT QGEIQAQLSS DHQTSQLNLG YLTSVRGNPG RKDQRGEGFD LRTDGHGSVR GGKGLFLTAE GQINAVGGHL SRDEFIRCMK AALEVAESLG GYSSQHEAPK TDTDPQSSLA KAVQEWDAGA NDHKEAPGQG GQPLLGAYAP AGMAFASPQT ITSYAGKHID TVSKLNQQVT AGQQYVVNGG TGISLFAHSG FWKGIAHRGK LILQSQSDGM DFNAKTDVVV TATDGSILGN AKNGITLMSG NAGIRIADGC VDIFGPTRVH AHTGNFDVPG PQGIQGALPQ FDSGDTGRKF RLIRPADSLP VAGMAYQIVK QDGSVVKGVT NSLGETGLHE SEAAEALSIS FGDELPSQEA RMVRTSLTLG DSNRKSDSGY QYKLKQSTYQ IKQAAYLPIE GVGALATFVV HGNLNLKTGE SGDSLWVNGM GTTSASSKGK TIFFAKASLR INGIDGAATP LATNNEAGFW PKDGSLPIGS ATLRLPRPDQ SLKVELVLSG GYVYEGDEGR SVPIPPQGSI VIPIGIVYAE GKSGGINV
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