Gene Rpic12D_1679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1679 
Symbol 
ID8019332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1783898 
End bp1787044 
Gene Length3147 bp 
Protein Length1048 aa 
Translation table11 
GC content61% 
IMG OID644830461 
Producttype VI secretion system Vgr family protein 
Protein accessionYP_002981634 
Protein GI241663274 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00352314 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGGCGCAG CAGAGCAGAT TTCCAACTTG GTGGGCAGCC ACCGCACAGT CAAAGCGAAA 
AGCAGCGCGA TTCCCGAGTT GCTGGGCGCG CCGCAGTTGG AATTCGTGCG CGTCACCGGT
CGCGAAGCCC TGAGCGAATT GTTCACCTAC ACAGTGGATC TGCGCCCCGT CTCGCTCGCC
GCCGATCAGT CCATGCTTGA ATCCGATCTC GATGCCGCTA TCGGCCAAGC GATGACGTTG
TCGATTGAAC TCGATGGCAT GGGCGATGGG GTGCTGGGCG GCATTGGCGC GGGCGAGCGC
CAGATCACCG GCCTGATCAC CGCCGTCGAG TTGATCGGCG GCGTGGACAA TAATCGCCTC
TACCGCTACA CCCTGCGCCC TTGGCTCTGG CTAGCGACGC AGACCTCCGA CTACAAACCA
TTCCAGAACA AGTCCGTCAT CGACATCCTC GATGAAGTGC TGGCCGACTA CCCGTACTCC
GTCGACAAAC GTCTGGACAC CAGTGTCTTC CCCAAGCTGA TTTGGGAAGT GCAGCACGGC
GAAACCGACG CCCTCTTCAT CCAACGCCTC ACTGAAGAAT GGGGCATCAC CTACTTCTTC
GAACACGACG GTGGTCACCA CCGACTCGTG CTCGTCTCCG AATCCGGCGC CTGGCGTCAA
TTCCCCAGCG AGGCCTATCA CACGCTGCCC ATTTACCCGC AAGGCTTCAA GGTAGACCAA
GAGCACCTGA CACGCTTCGA GCCAATCAAC CGCCTGCGCA CCGGCAAGAT CACCCTCAAA
GACTACGACC CGCGCCAGCC CAGGGCCGAC CTCACCACCG GCGACAGCCT CCCGCGTAAC
ACATTGTTCT CCGAGTTCGA GCGCTACGAA TACGAACCCG CCGTCTACAA CAGCCGCGAA
GCCGGCAACT TCCGCGCCCG CATCCGCATG GAAGAGCGCC GCGCTAAAGG CCGGCGCACC
CGTGGCACCG GTGCATTGCG TGGCGTCGCC GCTGGCCACA CTTACCAGAT CGCCAACCAC
GACCACGACG CACTCAACCG TGAATGGCTC ATCATCGGCA CCGAGTTCAT GCTCGAAGAC
GTGGGCCTGA AGGGTGGCAG CACCCAACGC TACGCCTGCC ATGTCCGATT TGAAGCCCAC
CCCACTGACG AAGTCTTCCG CCCACCGCTG ACGGCGCCCA AGCCACGCGT GCAAGGCATC
CAGCGCGCCG TGGTCACCGG CCCCGAGAAC CAGGAAGTCT GGTGCAACGA CCACGGCTAC
GTCAAAGTCC AATTCGAATG GGACCGCTAC GGCCAGTATG ACGAAAATTC GTCCCCCTGG
ATTCGCGTCT CCAACGGTTG GTCTGGCGAC CAGTTCGGCG CCATGCACGT GCCGCGCATC
CGGCAGGAAG TGCTGGTCGA CTACCTCAAC GGTGATCCGA ACACACCCAT CATCATCGGG
CGCGTTCCCA ACCAGCTCAA TACACCCCCG TGGAGTCTGC CAACGCAGCA CGCCCTGTCG
GGTGTCGCCA GCAAGGAGCT GTTCGGACAG CGGCGCAACC ACCTGTTGAT GGACGACACG
CAAGGCGAGA TTCAAGCCCA ACTGTCGTCC GACCACCAGA CCAGCCAGCT CAACCTCGGG
TACCTCACCA GCGTCCGCGG CAACCCAGGG CGCAAAGACC AACGCGGTGA AGGTTTTGAC
CTGCGTACCG ATGGCCACGG CAGTGTGCGT GGTGGCAAGG GCCTCTTCCT GACCGCAGAG
GGCCAGATCA ACGCCGTGGG TGGTCACCTC TCGCGCGACG AATTCATCCG CTGCATGAAA
GCCGCACTGG AAGTTGCCGA ATCATTGGGT GGCTACAGCA GCCAGCACGA AGCACCAAAG
ACTGACACCG ATCCACAAAG CAGTCTGGCC AAGGCCGTCC AGGAATGGGA TGCGGGAGCC
AACGATCACA AGGAAGCGCC GGGGCAGGGC GGCCAACCGC TGCTGGGTGC GTACGCTCCC
GCTGGTATGG CCTTCGCCAG CCCCCAAACC ATCACCAGCT ACGCCGGCAA GCACATCGAC
ACCGTCTCCA AGCTCAACCA GCAGGTCACG GCCGGTCAGC AATACGTTGT CAATGGCGGT
ACCGGGATCA GCCTGTTTGC GCACAGTGGA TTCTGGAAAG GTATCGCCCA CCGCGGCAAG
CTCATTCTGC AATCACAGAG TGATGGCATG GATTTCAACG CCAAGACCGA CGTAGTGGTG
ACTGCTACCG ACGGCAGCAT CTTGGGTAAT GCCAAGAATG GCATCACGCT CATGAGTGGC
AATGCGGGCA TTCGTATCGC CGACGGGTGT GTGGACATCT TTGGGCCGAC ACGCGTGCAT
GCGCATACGG GGAACTTTGA TGTACCGGGG CCTCAGGGTA TCCAAGGAGC ACTGCCGCAG
TTCGACTCGG GGGACACCGG GCGCAAGTTC CGCCTGATCC GGCCGGCGGA TAGCCTGCCG
GTAGCTGGTA TGGCCTATCA AATCGTCAAG CAAGACGGCA GCGTCGTAAA GGGCGTTACC
AATAGTCTGG GCGAAACCGG TCTGCACGAA TCTGAAGCAG CGGAGGCGCT GTCAATCTCT
TTTGGTGACG AACTGCCGAG CCAGGAAGCA AGAATGGTCC GCACGTCGTT GACGCTGGGC
GACAGCAATC GGAAGAGTGA CAGCGGATAC CAATACAAGC TCAAACAGTC GACCTATCAG
ATCAAGCAGG CCGCCTACTT GCCTATCGAG GGTGTTGGTG CTCTCGCCAC GTTCGTGGTC
CACGGAAACC TCAACCTGAA AACCGGTGAG TCCGGCGATT CTCTGTGGGT GAACGGCATG
GGGACTACCA GCGCCAGCAG CAAGGGCAAG ACCATCTTCT TTGCCAAGGC ATCGCTACGC
ATCAACGGTA TCGATGGAGC CGCTACCCCT TTGGCCACGA ACAATGAAGC AGGCTTCTGG
CCAAAGGATG GCTCTCTTCC TATTGGCTCT GCAACCCTGC GGCTTCCGCG CCCCGATCAG
TCACTCAAGG TCGAGTTGGT GCTTAGTGGG GGTTACGTCT ATGAGGGGGA CGAAGGCCGC
TCCGTGCCGA TTCCGCCTCA AGGTTCTATC GTCATACCGA TCGGAATTGT CTACGCAGAA
GGAAAGAGCG GGGGTATCAA TGTCTAG
 
Protein sequence
MGAAEQISNL VGSHRTVKAK SSAIPELLGA PQLEFVRVTG REALSELFTY TVDLRPVSLA 
ADQSMLESDL DAAIGQAMTL SIELDGMGDG VLGGIGAGER QITGLITAVE LIGGVDNNRL
YRYTLRPWLW LATQTSDYKP FQNKSVIDIL DEVLADYPYS VDKRLDTSVF PKLIWEVQHG
ETDALFIQRL TEEWGITYFF EHDGGHHRLV LVSESGAWRQ FPSEAYHTLP IYPQGFKVDQ
EHLTRFEPIN RLRTGKITLK DYDPRQPRAD LTTGDSLPRN TLFSEFERYE YEPAVYNSRE
AGNFRARIRM EERRAKGRRT RGTGALRGVA AGHTYQIANH DHDALNREWL IIGTEFMLED
VGLKGGSTQR YACHVRFEAH PTDEVFRPPL TAPKPRVQGI QRAVVTGPEN QEVWCNDHGY
VKVQFEWDRY GQYDENSSPW IRVSNGWSGD QFGAMHVPRI RQEVLVDYLN GDPNTPIIIG
RVPNQLNTPP WSLPTQHALS GVASKELFGQ RRNHLLMDDT QGEIQAQLSS DHQTSQLNLG
YLTSVRGNPG RKDQRGEGFD LRTDGHGSVR GGKGLFLTAE GQINAVGGHL SRDEFIRCMK
AALEVAESLG GYSSQHEAPK TDTDPQSSLA KAVQEWDAGA NDHKEAPGQG GQPLLGAYAP
AGMAFASPQT ITSYAGKHID TVSKLNQQVT AGQQYVVNGG TGISLFAHSG FWKGIAHRGK
LILQSQSDGM DFNAKTDVVV TATDGSILGN AKNGITLMSG NAGIRIADGC VDIFGPTRVH
AHTGNFDVPG PQGIQGALPQ FDSGDTGRKF RLIRPADSLP VAGMAYQIVK QDGSVVKGVT
NSLGETGLHE SEAAEALSIS FGDELPSQEA RMVRTSLTLG DSNRKSDSGY QYKLKQSTYQ
IKQAAYLPIE GVGALATFVV HGNLNLKTGE SGDSLWVNGM GTTSASSKGK TIFFAKASLR
INGIDGAATP LATNNEAGFW PKDGSLPIGS ATLRLPRPDQ SLKVELVLSG GYVYEGDEGR
SVPIPPQGSI VIPIGIVYAE GKSGGINV