| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1674 |
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| Symbol | |
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| ID | 8019327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 1779735 |
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| End bp | 1780982 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644830456 |
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| Product | type VI secretion system OmpA/MotB family protein |
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| Protein accession | YP_002981629 |
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| Protein GI | 241663269 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.169962 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0141986 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGAGC CAGCAGCGCA GCCTAGCCCC GAGCCGGTAC GCTCTGCCTC CACCCGAGCT
GCCAACGAAC CACGACAGAT CAAGCGCAAG CCGATCGAGC AACGTGTCGA GAAAGCCAAG
CAGGCAGTCA ACCCGGTACT GTCCGCCGCG CGGCCCTTGC TGCGCGCCCT GGCGGATATG
CCGAGCACAC TGCGCGTCGA TCAGGCCGCG CTTCTGAAAG ACGTGCTTGA ACAAGAGCTG
CACGACTTCC AGACCGTCTG CGAACGGGTG GGCATTCGGT CCGAGCACAC CCTTGCCGCA
CACTACAGCC TGTGCACCGC CTTGGATGAA GCGGCTTTAG GCACACCATG GGGCAGCAAT
GGTTCCTGGG CGAAGGACAG CCTGCTCGTC AAACACCATG GCGGCACTGA CGGCGGCACC
AAGGTCTTCC AAGTGCTCGG CCGGCTGGTC AACAGCCCTG AAGAGCACAT CGACGTCATC
GAGCTGATCT ACTACCTGCT CTCGCTCGAT TTCCAGGGCC GCTATCGTGG CCCCGCTGAG
GGCGAGCGGC AACACCTGGC GATTCGGCAG AGCCTGCATA CCCTGATCCG CAAGCATCGC
GGCGCCGTGC CCAGGGAACT GTCCCCGAAT CTGCCCGTGA TACCGGCAGG GCGCTTCTCC
ATGATTCGCA CCGTCCCGAT CTGGTTCAGC GCCACCGTGC TGGGCATGGC CGCCTTCGGC
TTGTTTGGCT GGTACAAGTA CCAGCTCTCG CTGCGCACGC ACGATCTGGA ACAACAGATC
CAGGCCATCG GGCAGATCAC CCCGCCGCCA CCGCCAAAGG TGGTCCTGCG TCTGGCCGAA
CTGCTCAAGG ACGAAATCGC TCGTGGCCAG GTCAAGGTGG AGGAAGATGC CACCCACAGC
GCCGTCACCT TCCGTGGCGA CGACATGTTT GCCGGCGGTC GCGCGGACGT GAACGCCAAG
GTCCAGCCCC TGCTGGACAA GATCGCCTCG GAAATCACCA AGGTACCCGG CAAGGTAACC
GTCACCGGGC ACAGTGACAA CCAGCCCATC AAGACGGCTA AGTTCCCTTC CAACCAGGTG
CTCTCGGAAG AGCGTGCCGT GCACGTCTCT GAATACCTCG CCTCGCGTGG CGTGGCACAG
GGCCGGCTCG AAGCCGTGGG CAAGGGCGAC ACCGAACCCG TGGCCGATAA CTCGACTTGG
AATGGCCGGG CAGCGAACCG CCGCGTGCAG ATCGACGTCA CGCAGTAA
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| Protein sequence | MQEPAAQPSP EPVRSASTRA ANEPRQIKRK PIEQRVEKAK QAVNPVLSAA RPLLRALADM
PSTLRVDQAA LLKDVLEQEL HDFQTVCERV GIRSEHTLAA HYSLCTALDE AALGTPWGSN
GSWAKDSLLV KHHGGTDGGT KVFQVLGRLV NSPEEHIDVI ELIYYLLSLD FQGRYRGPAE
GERQHLAIRQ SLHTLIRKHR GAVPRELSPN LPVIPAGRFS MIRTVPIWFS ATVLGMAAFG
LFGWYKYQLS LRTHDLEQQI QAIGQITPPP PPKVVLRLAE LLKDEIARGQ VKVEEDATHS
AVTFRGDDMF AGGRADVNAK VQPLLDKIAS EITKVPGKVT VTGHSDNQPI KTAKFPSNQV
LSEERAVHVS EYLASRGVAQ GRLEAVGKGD TEPVADNSTW NGRAANRRVQ IDVTQ
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