| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1673 |
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| Symbol | |
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| ID | 8019326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 1775916 |
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| End bp | 1779722 |
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| Gene Length | 3807 bp |
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| Protein Length | 1268 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644830455 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_002981628 |
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| Protein GI | 241663268 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0143992 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTCT TGAAACGACT GCGCAACGCG CTCTTTAGCT GGCAGATGCT GCTCCTGCTG
GCGATCCTGC TGGTCGCGGC GGCCGTCTGG TGGATTGGCC CGCTGCTGAG CTTTGATGGC
ATCGTGCCCC TGGCGGGTGT CGGCGTACGC GTGGCGGTGA TTGCCTTGCT GCTGGCGCTC
TATGTCTTTG TGGTCTGGGG GTGGCCCGTG TTCTTTCTGG CAGCGACGGC CCTGTGCCTG
CTGATCTGGC ACGCTGGCCC GTTGCTGGCC TTGAACGCAC ACCGTCCGCT GCAAGATACA
ACACCCCGTC TCCTGCTCAT TGCCGTCATC GTTCTCGTGT CGGTTGTCTA CCTGTTTGCG
TTGCTCTGGC GCAGTATTCG TTCAGGTGGC GTGGTCCGGA AATGGCTGGA TGCCAAGACC
GACGACGAAG AAGAGGTGGC CCCCGAGTCT GATGTCAAAG CCGTCACCAG TAGCGTGGAT
GCCGCCATGC GCCAGTTGAA GGCACTGCGC ACCCGCAGCG GCCTGGGTCG GCTGTTCGAG
GGGCGACGCT ATCTGTACGA ACTGCCGTGG TTCCTGACCC TGGGTATTGC CAGCACCGGC
AAGACCAGCG TACTGAGCAA TGCCGGCCTG CGCTTCCCGC TGGCAAGCGG CGCCGGTTCG
CCCGGTCGCG CGGAGGAAGA CCGCAAGGCA CCCGTCTGGC GTTTCAGCAA TGAAGCCGTG
CTGATCGACC CAGTCGGCAA CTACACCAGC CAAGACCGCA AGCCCGCGGC TGTCAAAGCC
GAGTGGAGCC GCTTCCTCGA TCTGCTGCGC AAGTATCGAG GCCGCGCGCC CATCAACGGC
GCGGTGGTCA CCGTCAGCGT GGCGGATCTG GTCCGCCAGA CCGCACAGGA ACGTGCCGAC
GAAGCGCTCA AGATCCGCCA CCGTCTGATC GAGTTGCGCC AAGAGCTGGG CATCCAGTTC
CCGATCTATG TCGTGGTAAC CAAGCTCGAC CTGTTGCCTG GCTTTGCCCA GTACTTCCAA
TACCTGGGAA GCGAGGGGCG GGCGCAGTCG TGGGGCTTTG GCCTACCGGC GGCGCATCGC
CCCAAGCGTG GCGAGACCGC CCACGCCATC GGCGCACTAT GCCGCACCGA GATGGCCGCG
TTGGAAGCGC GTCTCATCGC CGGCGAGACC GATCGCTTCA ACGAAGAGTT CGACGCTGGC
CGCAAGAAAG CACTGCTGGG CCTGGCCGAA GAGTTCGATG CCCTGACCAA CCCGCTGGCC
GATCTGGTTG ACCAGATCTT TGAAAACTCC CGCTACGACA ACACGCAACA CAACGCGATG
CTGCGAGGCG TGCATTTCAC CAGTGCGGCG CAGACCGGTG CATCGGTCAA TGCCGCCGAC
GACACAGTGA CGTTGCAGGT GCTGGACGCC AAGGCGCTCG ACGAGGAACA AGATGCCAAC
GCCACGACAA GCTCCGGCAG CTACTTCTTG CAGGACCTCT TCAAGCGAGG CGTCTTCCCC
GAGGCACACC TGGTGCGCCC GAACCTGCGT TGGGAGTTCC GCTTTCGCCT GATGCGTCTG
CTGGCCCACG CGCTGGTGTT GATGATCTTC TTGTGGCTGG TGGCTGGTTT CTATCTGAGC
TTTGGGCACA ACACCCACTA CCTCGACGTC GTGAAGGAGA AAACGCACGC ACTGGCTGCC
CGGGTCACCG CCTTCTACAA AAAGCCCGAG CCTGAAGGCA CGCCGGTGCT CCTGGCCGAA
GCCAACGACC TAGCGGCCTT TCCGGGCCTG GTCCTGTCGG AGCCACCGCT GCACTGGCGT
TACGGCTTGT ATGTCGCGCC GCAGGTGCTG GCTGCCGCCA TGGGGACCCA CGTCAAGCTG
GAAGACAACC TGCTAGTGCC CTACCTGGTG CGCCGTGTGG AAACCGTGCT CTCCGCTGCC
ATCGCCGACA AGGATGCCAA GCTGACCTAC GACACCTTGC GCGTCTACCT GATGCTGTAC
GACAAGGACA GCTTCAACGC GTTGGACGTA CGCGGCTGGG TGCAAAGTGA TTGGGCCACC
GGCGGTGGCG CGGACGCCTT TGGTGGCCGG ATTGCCGCGG TCGAGCACCT CAACAGCCTG
CTCGATGGCA CGCGCCCAAT TCACTCGCCG TATGCCAAGA ACGAAGACCT GATCCGTTCC
GCGCGGGACT TCCTGGACGG CAATACTTCC ACTGAGCGTT TGTACGACCG AGCCAAGGCC
GCCATGATGG AGGGGGCACC GGCGGACTTC ACGCTCGTGC GAGCCATCGG TCCGCAAGCT
GGCACGGTGT TCTCCCGTGC CAGCGGCGAG CCACTGGAGC GCGGCATCCC TGGCCTGTTT
ACCTACGCGG GGTATCACAA GGTGTTCAAC ACCCGACTGC CGGAGTTCGT CAACAAGGCA
CAGGCCATCG ATGCTTGGGT GATGGGACGC CCTGGCGCTC AAAAAAAAAC GCTTGAGAGC
GCAGCGGGCA GGCTGACGGG CGACGATCCC GTGTCCAGGG AGATTCGCCG CCTGTACTTG
ACCGAATACG CACAACGCTG GTCGGAATTC TTGTCCGACA TCCGAGCGTT GACCGGCAAC
AACCTCGCCT TTGACCTCGA AGTCCTGCGC AACTTCGCCG CCCCCGATTC GCCGCTGGCG
CGTCTGGGGC GCGTGGTGGT GCGCGAGACC ACGCTGAGCC AGCCGACCGA GCCGGAAGAC
AAGTCCCTCG CGGACAAGGC GCTGGCCGTC TTGGACAGCA AGTCCGACAA GATCAGCGGT
TTCGCAGCCC GCGCCGAAGC CCGGCAAGAA CGTGAACTGG TCGACAACCG CTTCGCCGCC
CTGCGCGAAG TCGTGACCGG CCAGGCCGAT GTGGCGGCAC CCAATGCCCA GACCAAAGGC
GGTCAGCCAC GGCTGGACGC CATCGCCGGC ATGGTCAATG CCTACTACAC GTCACTGATG
GTGGCCAGTA ACGCGCTGGA GACCCGCAAC CTGCCGCCAT CAGCCGAGGC GGGCGCCCAA
TTGAAGATGG AAGCCGCCAA GCTGCCGGCC CCGCTCAAAG AGGTGCTGGC CGATCTGGTG
GTGCAGGGCA CGCGTGACGT CAACAAGGGC ATTGGCGACA TCCTGATTGC GCAGATGAAC
GCAGTCATTG GCGAAAGTTG CCGCAGCGCC ATCGACGGCA AATATCCCTT CACGCCGACC
TCCGCTCAGG ACGTGGATAC CGAGGATTTC GCGCGCGTCT TTGCGACGGG CGGTGTGCTG
GACGATTTCT TCCAGAAGGT GCTGGCACCA CACGTGGATA CGACGATCTC GCCTTGGCGT
TACAAGCTGA GCGCACCCGA CGTGCCACCC GTGGCGGGTC CTAGCCTCAT CCCGTTCCAG
CGTGCCAAGG AAATCCGCGA AGTGTTCTTC CGTGACCCGG GCGCCAAGAA GATGGCCTGG
AAGGTGGATC TGAAGGTCGT GGAGCTGGAT CCGGAAATCG TTGAACTGAA CATGGACTTC
GACGGCCAAG GCCTGCGCTA TGTGCACGGC CCCGTAATCC CGCTCAAGGT CACGTGGCCC
GGCCCGCGCG GCGGGCAGGG CGCGGAGATC ACGGCCAACC CGCGCGTGCG GCCCGAGACT
TCGACACTCA CTGCCAACGG ACCATGGGCC ATGATGCGCG TGATTGCCAA GGGCAAGCTC
GCCAGCTCGG TATCGAACAG CCACTTCATC GCCGAGTATG ACTTCGATGG GCGTAAGGCC
AAGCTCGACA TCAATACAGG CAGCTTGGCG AATCCATGGA CGACCGGACT GCTGCAAGGC
TTCCAGTGCC CGGGGAGGTC TGGCTGA
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| Protein sequence | MEFLKRLRNA LFSWQMLLLL AILLVAAAVW WIGPLLSFDG IVPLAGVGVR VAVIALLLAL
YVFVVWGWPV FFLAATALCL LIWHAGPLLA LNAHRPLQDT TPRLLLIAVI VLVSVVYLFA
LLWRSIRSGG VVRKWLDAKT DDEEEVAPES DVKAVTSSVD AAMRQLKALR TRSGLGRLFE
GRRYLYELPW FLTLGIASTG KTSVLSNAGL RFPLASGAGS PGRAEEDRKA PVWRFSNEAV
LIDPVGNYTS QDRKPAAVKA EWSRFLDLLR KYRGRAPING AVVTVSVADL VRQTAQERAD
EALKIRHRLI ELRQELGIQF PIYVVVTKLD LLPGFAQYFQ YLGSEGRAQS WGFGLPAAHR
PKRGETAHAI GALCRTEMAA LEARLIAGET DRFNEEFDAG RKKALLGLAE EFDALTNPLA
DLVDQIFENS RYDNTQHNAM LRGVHFTSAA QTGASVNAAD DTVTLQVLDA KALDEEQDAN
ATTSSGSYFL QDLFKRGVFP EAHLVRPNLR WEFRFRLMRL LAHALVLMIF LWLVAGFYLS
FGHNTHYLDV VKEKTHALAA RVTAFYKKPE PEGTPVLLAE ANDLAAFPGL VLSEPPLHWR
YGLYVAPQVL AAAMGTHVKL EDNLLVPYLV RRVETVLSAA IADKDAKLTY DTLRVYLMLY
DKDSFNALDV RGWVQSDWAT GGGADAFGGR IAAVEHLNSL LDGTRPIHSP YAKNEDLIRS
ARDFLDGNTS TERLYDRAKA AMMEGAPADF TLVRAIGPQA GTVFSRASGE PLERGIPGLF
TYAGYHKVFN TRLPEFVNKA QAIDAWVMGR PGAQKKTLES AAGRLTGDDP VSREIRRLYL
TEYAQRWSEF LSDIRALTGN NLAFDLEVLR NFAAPDSPLA RLGRVVVRET TLSQPTEPED
KSLADKALAV LDSKSDKISG FAARAEARQE RELVDNRFAA LREVVTGQAD VAAPNAQTKG
GQPRLDAIAG MVNAYYTSLM VASNALETRN LPPSAEAGAQ LKMEAAKLPA PLKEVLADLV
VQGTRDVNKG IGDILIAQMN AVIGESCRSA IDGKYPFTPT SAQDVDTEDF ARVFATGGVL
DDFFQKVLAP HVDTTISPWR YKLSAPDVPP VAGPSLIPFQ RAKEIREVFF RDPGAKKMAW
KVDLKVVELD PEIVELNMDF DGQGLRYVHG PVIPLKVTWP GPRGGQGAEI TANPRVRPET
STLTANGPWA MMRVIAKGKL ASSVSNSHFI AEYDFDGRKA KLDINTGSLA NPWTTGLLQG
FQCPGRSG
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