| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1619 |
|---|
| Symbol | aceE |
|---|
| ID | 8019269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1719027 |
|---|
| End bp | 1721717 |
|---|
| Gene Length | 2691 bp |
|---|
| Protein Length | 896 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644830399 |
|---|
| Product | pyruvate dehydrogenase subunit E1 |
|---|
| Protein accession | YP_002981575 |
|---|
| Protein GI | 241663215 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
|---|
| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.931752 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCCG TACCAGAACA AGTCCTGGGT GCCACGAGCG CCAGCGACGC TGATCCCCAG
GAAACCAAGG AATGGCTGGA GGCGCTGCAA GGCGTCATCG GCGCGGAAGG CCCGCAGCGT
GCGGCATTCC TTCTTGATAA GCAGATCGAG TACGCACGCA TCAACGGCGT GACGTCTCCG
CTGCACGCAG AAACCCCGTA CATCAACACG ATCCCGGTCG AGAACCAGGA CCGCATTCCT
GGCAACCAGG AAATCGAGCA CCGCATCCGG TCGTACACGC GCTGGAACGC CATGGCGATG
GTGCTGCGCG CGAACAAGGA CACCAACGTA GGCGGCCATA TCTCGTCGTT CGCTTCGGCG
GCCACGCTGT ATGACGTCGG CTACAACCAC TTCTGGCACG CCCCGTCGGA CAAGCACGGC
GGCGACATGG TCTTCGTGCA GGGCCACTCG GCGCCGGGCG TGTATTCGCG CGCATTCCTG
CTGGGCCGCC TGACCGAGGA GCAACTCGAC AACTTCCGCC AGGAAGTGGA CGGCAAGGGC
ATCTCGTCGT ACCCGCACCC GTGGCTGATG CCGGATTTCT GGCAGTTCCC GACCGTGTCG
ATGGGCCTGG GCCCGATCAT GGCGATCTAC CAGGCGCGCT TCACCAAGTA TCTGGCCAGC
CGCGGCCTCA TCCAGAACTG GGAAAACCGC AAGGTCTGGG CATTCCTGGG CGACGGCGAA
ACCGACGAGC CGGAATCGCT GGGCGCGATC GGCATGGCCG GCCGTGAAAA GCTGGACAAC
CTTGTCTTCG TGATCAACTG CAACCTGCAG CGCCTGGACG GTCCGGTGCG CGGCAACGGC
AAGATCATCC AGGAGCTGGA ATCGGAATTC CGCGGCGCCG GCTGGAACGT CATCAAGGTC
ATCTGGGGCA GCCGTTGGGA TCAGCTGCTC GCCCGCGATA CCAAGGGGCT GCTGATGAGC
CGCATGATGG AATGCGTCGA CGGCGAGTAC CAGACCTTCA AGTCGAAGAG CGGCGCCTAT
GTGCGCGAGC ACTTCTTCAA CACCCCGGAA CTCAAGGCTA TGGTGGCCGA TTGGTCCGAC
GACGACATTT GGGCACTGAA CCGCGGCGGC CATGATCCGC ACAAGATCTA CGCGGCGTTC
CAGTCGGCGA CCAACCACAA GGGCCAGCCG ACCGTCATTC TCGCCAAGAC CATCAAGGGC
TATGGCATGG GCGAAGCCGG CGAAGCGATG AACATCGCCC ACCAGCAGAA GAAGATGCCG
GTGGATGCCA TCCGCAAGCT GCGTGATCGC TTCAACATTC CGGTTGCCGA CGACCAACTC
GAGCACGTTC CGTACGTCAA GTTCGAAGAA GGCTCGAAGG AACTGGAATA CATGCGCAAG
GCGCGCATGG ACCTCGGCGG CTACCTGCCG GCCCGTCGCC AGAAGGCCGA CGCGCTGCAA
ATTCCGGCGC TGTCTGCGTT TGACGCGTTG CTCAAGGCCA CCGGTGAAGG CCGCGAAGTG
TCCACGACGA TGGCCTTCGT GCGCATTCTG AACATCCTCC TCAAGGACAA GAACATCGGT
AAGCACGTCG TGCCCATCGT GCCGGATGAG TCGCGCACGT TCGGCATGGA AGGCCTGTTC
CGCCAGGTTG GTATCTGGAA CCAGGAAGGC CAGAAGTACG TGCCGCAGGA TCACGACCAG
CTGATGTTCT ACAAGGAATC GCAGACGGGT CAGGTGCTGC AGGAAGGCAT CAACGAAGCT
GGCGCCATGT GCGACTGGAT CGCGGCCGCA ACGTCGTATT CCACGCATGG CGTGGCGATG
ATCCCGTTCT ACATCTACTA CTCGATGTTC GGCATCCAGC GTATCGGCGA TCTGTGCTGG
GCCGCGGGCG ACATGCGCTC GCGCGGCTTC CTGCTCGGCG GCACCGCTGG CCGCACCACG
CTGAACGGCG AAGGCCTGCA GCACGAAGAC GGCCACTCGC ACGTGTACCA CGCTGCCATC
CCGAATTGCA TCTCGTATGA CCCGACCTTC CAGTACGAAC TGGCGGTGGT GGTGCAAGAC
GGCCTGCGCC GCATGTATGT CGAGCAGGAA GACGTTTATT ACTACCTGAC GGTGATGAAC
GAGAACTACG AGCACCCCGA AATGCCGGCG GGTGTCGAGG CCGACATCAT CAAGGGGATG
TACCAGTTCA AGAAGGGCGT CGAAAACAGC AATGCACCGC GCGTGCAACT GCTGGGTTCG
GGCACGATCT TCCGTGAAGT GATTGCCGCT GCCGATCTGC TGAAGAAGGA CTGGGGCGTT
GAGTCCGACC TGTGGGGCTG CCCGAGCTTT ACCGAGCTGG CCCGCGAAGG CAACGCCATC
GCACGCTGGA ACCTGCTCAA CCCGACCGAG CCGCAACGCG AGTCGCACGT CGAGAAGCTG
CTCAAGAACG CACGCGGCCC GGTTATCGCA TCGACCGACT ACGTCCGCAC CTTCGCCGAG
CAGATCCGCG CCTTCGTGCC GCGTCGCTAC GTGGTGCTGG GCACCGACGG CTTCGGCCGT
TCGGATACCC GCGAGAAGCT GCGCCACTTC TTCGAGGTGG ATCGCTACTG GGTGACGGTC
GCGTCGCTCA AGGCGCTCGC CGACGAAGGC GTGCTGCCGC GCGAAAAGGT GGCCGAGGCA
CTGAAGAAGT ACAACCTCGA TCCGAACAAG CCCAACCCGA TGACCGTATA A
|
|---|
| Protein sequence | MSAVPEQVLG ATSASDADPQ ETKEWLEALQ GVIGAEGPQR AAFLLDKQIE YARINGVTSP
LHAETPYINT IPVENQDRIP GNQEIEHRIR SYTRWNAMAM VLRANKDTNV GGHISSFASA
ATLYDVGYNH FWHAPSDKHG GDMVFVQGHS APGVYSRAFL LGRLTEEQLD NFRQEVDGKG
ISSYPHPWLM PDFWQFPTVS MGLGPIMAIY QARFTKYLAS RGLIQNWENR KVWAFLGDGE
TDEPESLGAI GMAGREKLDN LVFVINCNLQ RLDGPVRGNG KIIQELESEF RGAGWNVIKV
IWGSRWDQLL ARDTKGLLMS RMMECVDGEY QTFKSKSGAY VREHFFNTPE LKAMVADWSD
DDIWALNRGG HDPHKIYAAF QSATNHKGQP TVILAKTIKG YGMGEAGEAM NIAHQQKKMP
VDAIRKLRDR FNIPVADDQL EHVPYVKFEE GSKELEYMRK ARMDLGGYLP ARRQKADALQ
IPALSAFDAL LKATGEGREV STTMAFVRIL NILLKDKNIG KHVVPIVPDE SRTFGMEGLF
RQVGIWNQEG QKYVPQDHDQ LMFYKESQTG QVLQEGINEA GAMCDWIAAA TSYSTHGVAM
IPFYIYYSMF GIQRIGDLCW AAGDMRSRGF LLGGTAGRTT LNGEGLQHED GHSHVYHAAI
PNCISYDPTF QYELAVVVQD GLRRMYVEQE DVYYYLTVMN ENYEHPEMPA GVEADIIKGM
YQFKKGVENS NAPRVQLLGS GTIFREVIAA ADLLKKDWGV ESDLWGCPSF TELAREGNAI
ARWNLLNPTE PQRESHVEKL LKNARGPVIA STDYVRTFAE QIRAFVPRRY VVLGTDGFGR
SDTREKLRHF FEVDRYWVTV ASLKALADEG VLPREKVAEA LKKYNLDPNK PNPMTV
|
|---|
| |