| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1575 |
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| Symbol | |
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| ID | 8019223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 1670280 |
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| End bp | 1673711 |
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| Gene Length | 3432 bp |
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| Protein Length | 1143 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644830353 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002981531 |
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| Protein GI | 241663171 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.221185 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0233451 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATT TTTCGCTCTC CGCCCTGCCC GCCGTCAAAC CGGGCTCGCG CTTCGTCTTC
AGCGGCCTGC AGGGGGCGGC AGACGCCCTG CTGCTGGCGC GTTACCTCGA GCAGCATCGC
GCCACCGTGC CGATGCTGGC GGTGGTCTGC GCCAATGCCG TCGATGCCCA GCGCCTGGCG
GAGGAGCTAC GCTGGTTTGC CCCGCAGGCA CGCGTGAAGC TGCTGCCGGA CTGGGAAACG
CTGCCGTACG ACAATTTCTC GCCGCACCAG GATCTGATCT CCGAACGGCT GGCGACGCTG
CATGACCTGC AGAACGGTGC GTGCGACATC CTGCTCGTAC CGGCTTCCAC GGCGCTGCAA
CGCGTGGCGC CGCCATCGTT CCTGGCTGCC TACACGTTCT TCTTCAAGAA GGGCGAAAAG
CTGGACGAGG CCGCGCTGAA AGCGCAATTC ACCCTGGCCG GCTACGAGCA CGTCAGCGCC
GTGATGCGCC CGGGCGAATA TTCCGTGCGC GGCGGCCTGA TCGACTTGTT CCCGATGGGC
TCGCCGCTGC CCTATCGGCT GGACCTGTTC GGCGACGAGA TCGAGACCAT CCGTTCGTTC
GACCCGGACA CGCAGCGCAG CCTCTACCCG GTGAACGAAG TCCGCCTGCT GCCGGGCCGC
GAGTTTCCGA TGGACGAGGC GTCGCGCACC GCCTTCCGCG GTCGCTGGCG CGAGGTGTTC
GAAGGTGACC CGACGCGCTC GCCCATCTAC AAGGACATCG GCAACGGCGT GCCGAGCGCC
GGCATCGAGT ATTACCTGCC GCTGTTCTTT GAAGAAACCG CGACGCTGTT CGACTACCTG
CCGGGCGCCA CACACCTTGC GTTCGTCGGC GACATCGAAG GCGCGGTGCG ACGCTTCTGG
GCCGACACCA CGCAGCGCTA CAACTTCATG CGCCACGACC GCGAGCGGCC GTTGCTGCAG
CCGTCGGCGC TGTATCTGGA CGAAGAGGCG TTCTTCGTTG CCGCCAAGCC GCACGCGCGT
CTGGTGTTGC GCGCAGAGCC CGGCGATGCA CCGCTTTCGC TGCCGTTGCC GAACGTTGCC
GTCAACCGCC GCGCAGAAGA CCCGCTGGTC AATCTAGAAT CCTTCCTGAT GCGCAGCAAT
TGCCGCGTGA TGATCTGCGC CGAATCCGCA GGCCGCCGCG AGACGCTTGC GCAAATGCTG
ACCGCCAGCG GCCTGCACCC CGAAGGCGTC GCGGACTTCG CCGACCTGAT GAGCGGCGAT
GCCAAGTTCG TGCTTGGCGT GGCTCCGCTT TACCAGGGTT TCATCCTCGG CGACGAACGC
GTCGCGCTCA TCACAGAGAC TGAGCTGTAC GCGCAGACCG TGCGTCGCGC AGGTCGCCGC
AAGCAGGAAC AGGCCACCGC CGTCGATTCG ATGGTGCGCG ATCTGGCCGA GTTGAAGATC
GGCGACCCGG TGGTGCACAG CGAACACGGC ATCGGCCGCT ACCAGGGCCT GGTGTCCATC
GACATGGGCA ATGGCGAGGA AGAGTTCCTG CACCTCGACT ACGACAAGGG CAGCAAGCTC
TACGTGCCGG TGCATCAGTT GCACGTGATC TCGCGCTACT CAGGCGCCGA TCCGGAAACC
GCGCCGCTGC ATTCGCTCGG CTCCGGCCAA TGGGAAAAGG CCAAGCGCAA GGCGGCGCAG
CAGATTCGCG ATACGGCCGC CGAGCTTCTG AACCTGTACG CGCGGCGCGC ATTGCGCCAG
GGCTTCGCGT TCCCGCTCAC GCCCGAGGAT TACGCCACGT TTGCCGAGAG CTTCGGCTTT
GAGGAAACTC CCGATCAGGC CGCCGCCATC GCGGCGGTGA TCGCCGACAT GACGTCGGGC
AAGCCGATGG ATCGCCTCGT CTGCGGCGAC GTCGGTTTCG GCAAGACGGA AGTCGCGCTG
CGTGCCGCAT TTGTTGCGGT GATGGGCGGC AAGCAGGTGG CCATCCTGGC CCCGACCACG
CTGCTGGCCG AACAGCACTA CCAGACGCTG GTCGACCGCT TTGCCGACTG GCCGGTGCGC
ATTGCCGAGA TCTCGCGTTT CAAGAACAAA AAAGAAATCG ACGCCGCGAT CGAAGCCATC
AATGCCGGCA CGATCGACAT CGTGATCGGC ACGCACAAGC TGCTCTCGCC GGACGTGAAG
TTCGACCGCC TGGGGCTCGT CATCATCGAC GAGGAACACC GCTTTGGGGT GCGCCAGAAA
GAAGCGCTCA AGACGCTGCG CGCCGAGGTG GACGTTCTTA CGCTCACCGC CACGCCGATC
CCACGCACGC TGGGCATGGC GCTGGAAGGC CTGCGCGATT TCTCGGTGAT CGCCACGGCG
CCGCAAAAGC GGCTGGCCAT CAAGACGTTC CTGCGCCGCG AGGAAGACGG CGTGCTGCGC
GAGGCCATCC TGCGTGAGTT GAAACGCGGC GGGCAGGTCT ACTTCCTGCA CAACGAGGTC
GAGACCATCG AGAACAAGCG CGCCAAGCTC GAAGAGCTGA TTCCGGAAGC GCGCGTGGTG
GTCGCCCACG GCCAGATGCA CGAGCGCGAG CTGGAGCGCG TGATGCGCGA TTTCGTGGCG
CAGCGCGCCA ACATCCTGCT GTGTACGACG ATCATCGAGA CCGGTATCGA CGTGCCGACC
GCCAACACGA TCCTGATCCA CCGCGCCGAC AAATTCGGCC TGGCGCAGTT GCACCAGTTG
CGCGGTCGCG TCGGGCGCTC GCACCACCAG GCGTATGCGT ACCTGCTGGT GCACGACGTC
GACGGCCTCA CCAAGCAGGC GCAGCGCCGC CTTGAAGCCA TTCAGCAGAT GGAAGAACTC
GGTGCGGGCT TCTACCTGGC GATGCACGAT CTGGAAATAC GCGGCGCCGG CGAGGTGCTG
GGCGATAAGC AATCGGGCGA GATTACGGAG ATCGGCTTCC AGCTCTACAC CGACATGCTC
AACCAGGCGG TGAAGTCGCT CAAGGCCGGC AAGGAACCCG ACCTGATGGC GCCGCTCGCG
GCCACGACCG AGATCAACCT CGGCACGCCG GCCCTGCTGC CGCAAGACTA TTGCGGCGAC
GTGCAGGAAC GCCTGTCGCT GTACAAGCGT CTGGCCAACT GCGAAAGCAG CGAGACGATC
GACAATATCC AGGAGGAGCT GATCGACCGT TTCGGCAAGC TGCCGCCGCA GGCGCAATCG
CTCATCGAAA CGCACCGGCT GCGCATTGCC GCCGCGCCGC TGGGTATCCG CAAGATCGAC
ACCGGCGCGA ACGCCGTCAC GCTGCAGTTC ATCCCGAATC CGCCCGTTGA CGCCATCAAG
ATCATCGACC TCGTGCAGAA GAACCGGCAG ATCAAGCTGG CGGGGCAGGA TCGCCTGCGC
ATCGAGAACA TTCCGGCCGA ATTCGCCGCG CTGACGCAGA CCATCCGTCA TGCCATGCGG
CAATTGGCGT GA
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| Protein sequence | MSDFSLSALP AVKPGSRFVF SGLQGAADAL LLARYLEQHR ATVPMLAVVC ANAVDAQRLA
EELRWFAPQA RVKLLPDWET LPYDNFSPHQ DLISERLATL HDLQNGACDI LLVPASTALQ
RVAPPSFLAA YTFFFKKGEK LDEAALKAQF TLAGYEHVSA VMRPGEYSVR GGLIDLFPMG
SPLPYRLDLF GDEIETIRSF DPDTQRSLYP VNEVRLLPGR EFPMDEASRT AFRGRWREVF
EGDPTRSPIY KDIGNGVPSA GIEYYLPLFF EETATLFDYL PGATHLAFVG DIEGAVRRFW
ADTTQRYNFM RHDRERPLLQ PSALYLDEEA FFVAAKPHAR LVLRAEPGDA PLSLPLPNVA
VNRRAEDPLV NLESFLMRSN CRVMICAESA GRRETLAQML TASGLHPEGV ADFADLMSGD
AKFVLGVAPL YQGFILGDER VALITETELY AQTVRRAGRR KQEQATAVDS MVRDLAELKI
GDPVVHSEHG IGRYQGLVSI DMGNGEEEFL HLDYDKGSKL YVPVHQLHVI SRYSGADPET
APLHSLGSGQ WEKAKRKAAQ QIRDTAAELL NLYARRALRQ GFAFPLTPED YATFAESFGF
EETPDQAAAI AAVIADMTSG KPMDRLVCGD VGFGKTEVAL RAAFVAVMGG KQVAILAPTT
LLAEQHYQTL VDRFADWPVR IAEISRFKNK KEIDAAIEAI NAGTIDIVIG THKLLSPDVK
FDRLGLVIID EEHRFGVRQK EALKTLRAEV DVLTLTATPI PRTLGMALEG LRDFSVIATA
PQKRLAIKTF LRREEDGVLR EAILRELKRG GQVYFLHNEV ETIENKRAKL EELIPEARVV
VAHGQMHERE LERVMRDFVA QRANILLCTT IIETGIDVPT ANTILIHRAD KFGLAQLHQL
RGRVGRSHHQ AYAYLLVHDV DGLTKQAQRR LEAIQQMEEL GAGFYLAMHD LEIRGAGEVL
GDKQSGEITE IGFQLYTDML NQAVKSLKAG KEPDLMAPLA ATTEINLGTP ALLPQDYCGD
VQERLSLYKR LANCESSETI DNIQEELIDR FGKLPPQAQS LIETHRLRIA AAPLGIRKID
TGANAVTLQF IPNPPVDAIK IIDLVQKNRQ IKLAGQDRLR IENIPAEFAA LTQTIRHAMR
QLA
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