Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1331 |
Symbol | |
ID | 8018976 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1404812 |
End bp | 1406011 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644830111 |
Product | succinyldiaminopimelate transaminase |
Protein accession | YP_002981292 |
Protein GI | 241662932 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.785266 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAATCCGC GCCTGTCCGC CCTACAGCCG TATCCGTTCG AGAAACTGAA AGCGCTTGTG AAGGACGTCA CGCCCAGCGC CGCCCATACG CCGATCAGCT TTGGCATCGG CGAGCCCAAG CACCCGACGC CGGCCCTGGT GAAAGACGCG CTGACGGCGG CGCTCGGCGG GCTGGCGAAT TATCCCACGA CGCTTGGCTC CGATGCACTG CGACAGTGCA TCGCTGCATG GCTGGAGCGC CGCTACGGCT TGCCGAAGGT CGACCCAGCC ACTGAAGTCA TCCCCGTCAA CGGCTCGCGC GAGGCGCTGT TCTCGTTCGC GCAGACCGTG ATCGACGGCA GCAAGCCCGG TGCCCGCGTG CTGTGCCCGA ACCCGTTCTA CCAGATCTAC GAAGGCTCGG CGCTGCTGGC CGGTGCCACG CCCCTGTTCG CCAACAGCGA CCCGGCGCGC AACTACGCAC CCGATTTCGC CGCGATCACG CCCGAAGAAT GGCGCAACGT GCAGCTCGTC TTCGTATGCA GCCCCGGCAA CCCGACCGGC GCCGTGCTCA CCCTCGAAGA CTGGAAGCAA CTCTTCGCCT TGTCGGACGA ATACGGCTTC ATCATCGCGT CGGACGAGTG CTACTCCGAA ATCTATTTCG ACGAGGCCAA CCCGCCGCTG GGCGCGCTGC AGGCCGCGCA CAAGCTGGGC CGAGGCTTTG ACCGCCTCGT GATGTTCTCC AGCCTGTCCA AACGCTCCAA CGTGCCGGGC ATGCGTTCCG GCTTCGTGGC AGGCGACGCC AAGCTGCTCA AGGCCTATCT GCTGTATCGC ACGTATCACG GCAGCGCGAT GAGCCCGTCG GTGCAGTCCG CTAGCATCGC TGCGTGGAAT GACGAGACCC ACGTGCGCGA CAACCGCGCG CAATACGTCA AGAAGTTCCA ACAGGTCACG CCGATGCTGG CCGAGGTGCT GGACGTGGCC CTGCCCGACG CAGCCTTCTA CCTGTGGGCC AACGTCAAGC GCACGGGCCT GTCGGACACT GAATTCGCAC GCCAGCTGCT GGCCGCCAAG AACGTCGCCG TCCTGCCGGG CAGCTACCTT GCCCGCGAGG CGCATGGCAC GAACCCGGGC CAGGACTACG TGCGCATCGC GCTGGTGGCC GGCGTGGACG AATGCCTGGA AGGCGCGCGC CGGGTTGTCG AGTTCTGCCA GCAACGCTGA
|
Protein sequence | MNPRLSALQP YPFEKLKALV KDVTPSAAHT PISFGIGEPK HPTPALVKDA LTAALGGLAN YPTTLGSDAL RQCIAAWLER RYGLPKVDPA TEVIPVNGSR EALFSFAQTV IDGSKPGARV LCPNPFYQIY EGSALLAGAT PLFANSDPAR NYAPDFAAIT PEEWRNVQLV FVCSPGNPTG AVLTLEDWKQ LFALSDEYGF IIASDECYSE IYFDEANPPL GALQAAHKLG RGFDRLVMFS SLSKRSNVPG MRSGFVAGDA KLLKAYLLYR TYHGSAMSPS VQSASIAAWN DETHVRDNRA QYVKKFQQVT PMLAEVLDVA LPDAAFYLWA NVKRTGLSDT EFARQLLAAK NVAVLPGSYL AREAHGTNPG QDYVRIALVA GVDECLEGAR RVVEFCQQR
|
| |