Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1309 |
Symbol | |
ID | 8018954 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1381249 |
End bp | 1382628 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644830089 |
Product | lysophospholipid transporter LplT |
Protein accession | YP_002981270 |
Protein GI | 241662910 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00718572 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.641684 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGCCGG CAGGTCGTGA AGAGGAAGAT GGCACCGCGG TCTACGGGGA CGAATTCGAA GGTATGAAGA AGGGTTTTTA CACCATCATG GCGGCGCAGT TTTTTTCGTC GCTCGCTGAC AATGCGCTGC TCATTGCCGC CATCGCCCTT CTGACAGAGA TGCATGCGCC GCAGTGGATG ACCCCGCTGC TCAAGCTGTT CTTCGTGCTC TCTTACGTTT TACTTGCCGC GTTCGTCGGC GCGTTTGCCG ATTCCCGGCC CAAGGGCAAG GTGATGCTCA TCACCAATGC CATCAAGCTG GTCGGTTGTG GCGTGATGCT CACCGGCCTG CATCCGCTGC TCGCCTATGG CGTGGTCGGC TTTGGTGCGG CGGCGTATTC TCCGGCTAAG TACGGCATCC TTACCGAGCT TCTTCCGCCT GAAAAACTCG TCGCCGCCAA TGGATGGATC GAAGGCCTGA CCGTCGGCTC GATCATCCTC GGCACCGTGC TAGGTGGGGC GCTCATCTCC AACCATGTGT CGGCCTGGCT GCTGTCGTTC GACATTCCCG GGCTCGAGCG CATCGACACG CCGGCTGAAG CGGCGATGCT GGTGATCATG GTGATCTACC TGATCGCGGC GCTGTTCAAC ACCCGCATTC CCGATACCGG CGCGCGCTAT CCGCAGCAGG AAAAGAACCC GGTACGTCTC ATTTCGGAGT TTGCCGACTG CTTCAACGCG CTGTGGCGCG ACAGGCTCGG CCAGATCTCC CTGGCGGTGA CAACGCTGTT CTGGGGCGCA GGCGCCACGC TGCAATTCAT CGTGCTGAAG TGGGCCGAGC AATCGCTGGA GCTGAACCTC TCGCAGGGCG CCATTCTGCA GGCCGTGGTG GCCGTGGGCG TGGCCGCCGG TGCCATGGCT GCCGCCGTGA AAATTCCGCT GCGCCGCTCG CTCGACGTGC TGCCGGTGGG CGTGGCAATG GGCGCAGTTG TGATGCTGAT GGCGTTCTAC ACCAAGCACA CGATCCCGGA AGTCACATTC CACATCGGCA ACATGAAGCT GCCGCTGTAC ATGATGATCG CCTACCTGTT CCTGATGATC GTGGGCGCCA TGTCGGGCTT TTTCGTGGTG CCGATGAACG CGCTGCTGCA GCACCGCGGG CATGTGCTGC TCTCGGCCGG CCACTCGATT GCGGTGCAGA ACTTCAACGA GAATGTCTCC GTGCTGCTGA TGCTGTGCCT GTATGCGCTG CTCATCAAGC TCAATGTGTC GGTGGGCGTG GTGATCGTGT CGTTCGGCAT CTTCGTCTGC CTGACGATGG CGCTGGTCAT GCGCCGGCAT CGCCTCAACG AAAAGCTGTT TCACACCGCC GCGCTCATCG GCGAAGACAA GCACCACTGA
|
Protein sequence | MLPAGREEED GTAVYGDEFE GMKKGFYTIM AAQFFSSLAD NALLIAAIAL LTEMHAPQWM TPLLKLFFVL SYVLLAAFVG AFADSRPKGK VMLITNAIKL VGCGVMLTGL HPLLAYGVVG FGAAAYSPAK YGILTELLPP EKLVAANGWI EGLTVGSIIL GTVLGGALIS NHVSAWLLSF DIPGLERIDT PAEAAMLVIM VIYLIAALFN TRIPDTGARY PQQEKNPVRL ISEFADCFNA LWRDRLGQIS LAVTTLFWGA GATLQFIVLK WAEQSLELNL SQGAILQAVV AVGVAAGAMA AAVKIPLRRS LDVLPVGVAM GAVVMLMAFY TKHTIPEVTF HIGNMKLPLY MMIAYLFLMI VGAMSGFFVV PMNALLQHRG HVLLSAGHSI AVQNFNENVS VLLMLCLYAL LIKLNVSVGV VIVSFGIFVC LTMALVMRRH RLNEKLFHTA ALIGEDKHH
|
| |