Gene Rpic12D_1291 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1291 
Symbol 
ID8018936 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1364049 
End bp1365776 
Gene Length1728 bp 
Protein Length575 aa 
Translation table11 
GC content67% 
IMG OID644830071 
Productthiamine pyrophosphate protein 
Protein accessionYP_002981252 
Protein GI241662892 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0542091 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.167198 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGACAC CAGCCGCACG CCCCGCCAGC CTTGTCGTTG AGCCCCGCCA CGGCGGCCAG 
ATTCTTGTCG ATGCGCTGCT GGCCCACGGC GTCGATTTGG CCTTCGGCGT GCCCGGCGAG
AGCTACCTGT CGGTGCTCGA AGGCTTCTAC CAGCGCCGCG ACCGCGCCCG CTTCATCGTC
TGCCGGCAAG AGGGCGGTGC GGCCAACATG GCGGATGCGT ACGGCAAGCT CACCGGGCGC
CCCGGCATCG TCTTCTGCAC GCGCGGGCCC GGCGCCACCA ACGCCAGCAT CGGCGTACAC
ACTGCATTTC AAGACTCCAC GCCGCTGATC CTGTTTGTCG GGCAGGTCGG CCGCGATTTC
GTCGACCGCG AAGCATTTCA GGAGATCGAC TACCGCCGCA TGTTCGGCCA GATGGCGAAG
TGGGTCGCGC AGATCGATAG CGTCGAACGC ATCCCCGAAT ACATCGCACG CGCCTTCCAG
ACTGCCACCG CCGGGCGTCC CGGCCCCGTG GTGCTGGCGT TGCCCGAAGA CATGCTGACC
GACGTTGCGA CCGTGCCGGA TGTGCCGCCC GAGTTTGCAA CGAAAGCTCG CGTGATGGCT
TGGCCCGGCC CGCGTGATCT TGCCCAACTG AAGACGCTGC TGCAGGACGC CGAGCGCCCG
ATGCTGCTGC TGGGCGGTTC CGGCTGGACG CCACAAGCCG CCGCCCGCAT GCAGGCCTTT
GCCGAGCGCT GGAATCTGCC CGCAGGCTGC GTGTTCCGTC GGCAAGACCT GTTCGACAAC
CGCCACCCGA ATTACGCCGG TGATGTCGGT ATCGCCATCA ATCCGAAGCT GGCGGCGCGC
GTGAAAGACG CCGACTTGGT GCTCGCTATC GGCACACGCC TGGGCGAGAT GACGACCTCG
GGCTACACGC TCTTCGACGT GCCGCGCCCG AAGCAGACGC TGGTGCATGT GCATGCCGGC
GCGGAGGAGT TGGGCCGCGT CTACCAGGCG GACCTGATGA TTCACGCGTC GATGCCCGCG
ATTGCCGAAG CACTGGACGG CGTATCGCCG GATGCGCCGC CGCGCTGGTC CGCCTGGACA
GAGGCCGCCA ATGCCGATTA CCGCGCCAAC ATCGCGCCGC CGCCGTTTGG AGGCAAGGGC
ATCGACATGG CCCGCGCCAT GCAATGGCTG CGCGAGCGCC TCCCGCAGAA CAGCATCCTG
ACCAACGGCG CAGGCAATTA CGCCACGTGG CTGCATCGCT TCTATCAATA CGGTGCGCTG
GCGGCAGGCT CGCGTACGCA ATTGGCGCCG ACCAGCGGTG CGATGGGCTA TGGCGCACCC
GCCGCAGTGG CGGCCAAAAT CATCTGCCCC GACACACCCG TCATCTGCAT GGCCGGCGAC
GGCTGCTTCC TGATGAACGG CCAGGAGCTG GCGACCGCGA TGCAGTACAA CGCGCCGGTG
ATCTTTATCG TGGTCAACAA CGGCATGTAC GGCACCATCC GCATGCACCA GGAACGCGAG
TATCCCGAGC ACGTGAGCGG CACCGACCTT CGCAACCCGG ACTTCGCCGC GTTAGCGCGG
GCCTACGGCG CTGAAGGGCA CACGGTGCGC TCGCTCGAAG GTTTTCAGTC GGCGGTGGAG
GCGGCGCTCG CGGCAAGCGT TGCCTCCGTC ATCGAGGTGC AGACCGATCC GAACATCATC
AGCCCGCGTG CGACGATCGA CTCGTTGCGT GCACAGTCGC GCAGTTGA
 
Protein sequence
METPAARPAS LVVEPRHGGQ ILVDALLAHG VDLAFGVPGE SYLSVLEGFY QRRDRARFIV 
CRQEGGAANM ADAYGKLTGR PGIVFCTRGP GATNASIGVH TAFQDSTPLI LFVGQVGRDF
VDREAFQEID YRRMFGQMAK WVAQIDSVER IPEYIARAFQ TATAGRPGPV VLALPEDMLT
DVATVPDVPP EFATKARVMA WPGPRDLAQL KTLLQDAERP MLLLGGSGWT PQAAARMQAF
AERWNLPAGC VFRRQDLFDN RHPNYAGDVG IAINPKLAAR VKDADLVLAI GTRLGEMTTS
GYTLFDVPRP KQTLVHVHAG AEELGRVYQA DLMIHASMPA IAEALDGVSP DAPPRWSAWT
EAANADYRAN IAPPPFGGKG IDMARAMQWL RERLPQNSIL TNGAGNYATW LHRFYQYGAL
AAGSRTQLAP TSGAMGYGAP AAVAAKIICP DTPVICMAGD GCFLMNGQEL ATAMQYNAPV
IFIVVNNGMY GTIRMHQERE YPEHVSGTDL RNPDFAALAR AYGAEGHTVR SLEGFQSAVE
AALAASVASV IEVQTDPNII SPRATIDSLR AQSRS