Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1291 |
Symbol | |
ID | 8018936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 1364049 |
End bp | 1365776 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644830071 |
Product | thiamine pyrophosphate protein |
Protein accession | YP_002981252 |
Protein GI | 241662892 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0542091 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.167198 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAGACAC CAGCCGCACG CCCCGCCAGC CTTGTCGTTG AGCCCCGCCA CGGCGGCCAG ATTCTTGTCG ATGCGCTGCT GGCCCACGGC GTCGATTTGG CCTTCGGCGT GCCCGGCGAG AGCTACCTGT CGGTGCTCGA AGGCTTCTAC CAGCGCCGCG ACCGCGCCCG CTTCATCGTC TGCCGGCAAG AGGGCGGTGC GGCCAACATG GCGGATGCGT ACGGCAAGCT CACCGGGCGC CCCGGCATCG TCTTCTGCAC GCGCGGGCCC GGCGCCACCA ACGCCAGCAT CGGCGTACAC ACTGCATTTC AAGACTCCAC GCCGCTGATC CTGTTTGTCG GGCAGGTCGG CCGCGATTTC GTCGACCGCG AAGCATTTCA GGAGATCGAC TACCGCCGCA TGTTCGGCCA GATGGCGAAG TGGGTCGCGC AGATCGATAG CGTCGAACGC ATCCCCGAAT ACATCGCACG CGCCTTCCAG ACTGCCACCG CCGGGCGTCC CGGCCCCGTG GTGCTGGCGT TGCCCGAAGA CATGCTGACC GACGTTGCGA CCGTGCCGGA TGTGCCGCCC GAGTTTGCAA CGAAAGCTCG CGTGATGGCT TGGCCCGGCC CGCGTGATCT TGCCCAACTG AAGACGCTGC TGCAGGACGC CGAGCGCCCG ATGCTGCTGC TGGGCGGTTC CGGCTGGACG CCACAAGCCG CCGCCCGCAT GCAGGCCTTT GCCGAGCGCT GGAATCTGCC CGCAGGCTGC GTGTTCCGTC GGCAAGACCT GTTCGACAAC CGCCACCCGA ATTACGCCGG TGATGTCGGT ATCGCCATCA ATCCGAAGCT GGCGGCGCGC GTGAAAGACG CCGACTTGGT GCTCGCTATC GGCACACGCC TGGGCGAGAT GACGACCTCG GGCTACACGC TCTTCGACGT GCCGCGCCCG AAGCAGACGC TGGTGCATGT GCATGCCGGC GCGGAGGAGT TGGGCCGCGT CTACCAGGCG GACCTGATGA TTCACGCGTC GATGCCCGCG ATTGCCGAAG CACTGGACGG CGTATCGCCG GATGCGCCGC CGCGCTGGTC CGCCTGGACA GAGGCCGCCA ATGCCGATTA CCGCGCCAAC ATCGCGCCGC CGCCGTTTGG AGGCAAGGGC ATCGACATGG CCCGCGCCAT GCAATGGCTG CGCGAGCGCC TCCCGCAGAA CAGCATCCTG ACCAACGGCG CAGGCAATTA CGCCACGTGG CTGCATCGCT TCTATCAATA CGGTGCGCTG GCGGCAGGCT CGCGTACGCA ATTGGCGCCG ACCAGCGGTG CGATGGGCTA TGGCGCACCC GCCGCAGTGG CGGCCAAAAT CATCTGCCCC GACACACCCG TCATCTGCAT GGCCGGCGAC GGCTGCTTCC TGATGAACGG CCAGGAGCTG GCGACCGCGA TGCAGTACAA CGCGCCGGTG ATCTTTATCG TGGTCAACAA CGGCATGTAC GGCACCATCC GCATGCACCA GGAACGCGAG TATCCCGAGC ACGTGAGCGG CACCGACCTT CGCAACCCGG ACTTCGCCGC GTTAGCGCGG GCCTACGGCG CTGAAGGGCA CACGGTGCGC TCGCTCGAAG GTTTTCAGTC GGCGGTGGAG GCGGCGCTCG CGGCAAGCGT TGCCTCCGTC ATCGAGGTGC AGACCGATCC GAACATCATC AGCCCGCGTG CGACGATCGA CTCGTTGCGT GCACAGTCGC GCAGTTGA
|
Protein sequence | METPAARPAS LVVEPRHGGQ ILVDALLAHG VDLAFGVPGE SYLSVLEGFY QRRDRARFIV CRQEGGAANM ADAYGKLTGR PGIVFCTRGP GATNASIGVH TAFQDSTPLI LFVGQVGRDF VDREAFQEID YRRMFGQMAK WVAQIDSVER IPEYIARAFQ TATAGRPGPV VLALPEDMLT DVATVPDVPP EFATKARVMA WPGPRDLAQL KTLLQDAERP MLLLGGSGWT PQAAARMQAF AERWNLPAGC VFRRQDLFDN RHPNYAGDVG IAINPKLAAR VKDADLVLAI GTRLGEMTTS GYTLFDVPRP KQTLVHVHAG AEELGRVYQA DLMIHASMPA IAEALDGVSP DAPPRWSAWT EAANADYRAN IAPPPFGGKG IDMARAMQWL RERLPQNSIL TNGAGNYATW LHRFYQYGAL AAGSRTQLAP TSGAMGYGAP AAVAAKIICP DTPVICMAGD GCFLMNGQEL ATAMQYNAPV IFIVVNNGMY GTIRMHQERE YPEHVSGTDL RNPDFAALAR AYGAEGHTVR SLEGFQSAVE AALAASVASV IEVQTDPNII SPRATIDSLR AQSRS
|
| |