| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1215 |
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| Symbol | |
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| ID | 8018859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 1290812 |
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| End bp | 1292341 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644829997 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002981179 |
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| Protein GI | 241662819 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.156046 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCCT TGAACTCCGC CCCTCAGGCA CTTTCGCCCC AAAGCCGCGC AGGCAGCATG
CGCGCGCAAT GGCCGGCGCG CCTGGGCGTG GCGCTTTCCG CCGTGACGCT GGCCGTGCTG
GCCGGTTGCG CCAACCTCGG CAATTCGCAC AGCACGCAGA CACTGACAAC GCCCGGGCAA
CTGGCGAGCA CGCAATCGTT GCCCTCTCAA GGCGGCCAAT GGCCGTCACT GAACTGGGTC
GACCAGTTCA ACGATCCGCA ACTGCGTGCG CTGGTAGACG AGGCGATCAA GGACAACCCG
AACCTGCAGG TCGCATTTGC TCGCGTGCGT GCTTCGCGTG CGATGGCCGA TGTGGTGCGC
GGGAATCTGT ATCCGAGCGT CGGTCTCGAT GCTGACATGA CACGCCAGCG CCTGTCGGAA
TACGACATGT TTGAAGGTAC GCCACTGGCC GGCCGCTGGT TCACGGAATC GAAGATCCAA
CTTGGCGTGA GCTATGACCT CGATTTTTGG GGCAAGAATC GCTCCGCGCT GGAAGCCGCC
TTGTCCGACG ACAAGGCCAT GGAAGCGGAA AGCCAGGCTT CGCGATTGAT GCTGTCGACC
ACGGTGGCAC GCACCTACGC CAAGCTGGCC GCGCTTTATG CGCAGCGCGA CGTGGCCGAA
CGTGCGATCG TGCAACGCAA GGATCTGACC AGCCTTGCCG GCCAACGCCT GCGTGCCGGC
CTGGATACGC AAGTCGAAAC CACGCAAGCG CGCGCCAACG TGGCCGCCGC GCAAACGGAA
CTTGAGCAGG TCGACGAGCA GATCACGCTG GCGCGCAACC AGCTCGCCGC GCTGCTGGGC
AAGGGCCCGG ACCGCGGTTT GGCGATTGCA CGCCCGACGC TGCTTGCACA AGCCACGCCC
AAGCTGCCGA ACAACCTCAC CATCGATTTG ATCGGCCGCC GCCCGGACCT CGTGGCCGCG
CGCTGGCGCG TGGAAGCCGC GTCGAAGGAC ATTGACGTGG CCAAGGCGCA GTTCTTGCCG
GACATCAGCC TGACTGCATT CCTGGGGCTG GCTTCGATTG CGCCGGAAAA CCTGCTGCTG
GGCGCATCGC GTCAGCTCGG TATCGGCCCG GCGCTCAAGC TGCCGATCTT CCAGGGTGGC
AAGCTGCGCG CCAATCTGCG CGGCAAGTAC GCCAACTATG ACGCTGCTGT CGCCAGCTAC
AACCAGACGC TGACGGAAGC GCTGCACGAC ACCGCCGACC AGATCACCGC GTTGCATAGC
ATCGATGCTC AGATCGCGAT CCAACGTACT GCCTTGAGCG AGGCCGAGCG CGCATACAGC
TTGGCCCGCA CGCGCTACAG CGCTGGCCTC GGCACCCAAC TGGTCGTGCT GAACGCCGAA
ACAACCGTGC TGCAACAACG CAAGCTCGCG ACCGACCTGC AGGCGCGCCG CCTGGACGCG
CAAATGGCTC TTATCAAAGC CCTCGGCGGC GGTTACACGG CCGAAGCGCT CCCAGGAGCC
AAGCCCGAGG CCGCTGCATC GCAGGGCTGA
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| Protein sequence | MNALNSAPQA LSPQSRAGSM RAQWPARLGV ALSAVTLAVL AGCANLGNSH STQTLTTPGQ
LASTQSLPSQ GGQWPSLNWV DQFNDPQLRA LVDEAIKDNP NLQVAFARVR ASRAMADVVR
GNLYPSVGLD ADMTRQRLSE YDMFEGTPLA GRWFTESKIQ LGVSYDLDFW GKNRSALEAA
LSDDKAMEAE SQASRLMLST TVARTYAKLA ALYAQRDVAE RAIVQRKDLT SLAGQRLRAG
LDTQVETTQA RANVAAAQTE LEQVDEQITL ARNQLAALLG KGPDRGLAIA RPTLLAQATP
KLPNNLTIDL IGRRPDLVAA RWRVEAASKD IDVAKAQFLP DISLTAFLGL ASIAPENLLL
GASRQLGIGP ALKLPIFQGG KLRANLRGKY ANYDAAVASY NQTLTEALHD TADQITALHS
IDAQIAIQRT ALSEAERAYS LARTRYSAGL GTQLVVLNAE TTVLQQRKLA TDLQARRLDA
QMALIKALGG GYTAEALPGA KPEAAASQG
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