| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1207 |
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| Symbol | |
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| ID | 8018851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 1279470 |
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| End bp | 1281254 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644829989 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_002981171 |
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| Protein GI | 241662811 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.948896 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCCG ACGCCGACGC TCAGCCGCCG CGACAAGACG GCGGTGATGG GACTGAGGCC
ACCCCTCGCC GCAAGGGATT GCGCCGAGGC TTGCGCAACC TCGTGGCTTC GCGCCGCCAG
CAGCAGGATG GTCGCCCTGA GGGCGAAGCC GCCGATGCGG GTGGTGCAGA CGCCGGCCAG
CCTGCGCAAC CGCGCAAGAC CCGCGCGCCA CGGGCGCGCA AGCCGAAAGA GGCGGCTGGT
GAGCCGGCGG TAGTTGCTGC AGAAGGTGCT GCGCCGGCCG AACAGGCGCC AGCAGAAAAC
CAGGGCGAGC GACGTGGCCC GCGCGGCCGT TTCGGCAAGA ACCGCCGCCG CCCGGGCGAA
GGTCAGCCGC TGGAGCGCGC CGAGCGCAAC GACCGTGTGG AAGGCGCTGG CGGCAAGAAC
ACCGGGGGTC GTGGCAAGTC GCAGAACCGC AACGGCAAAC CGCAAGGCAA GGCAGGCGGC
GCGAACCAGA ATCGCGGGGG CAAGGGGCTG AAGGGAGGCA AGGGCTCTGA AGACGTCTTC
CAATACGTGA TTTCCGGGGC GTACGACTCA GAGGCTGACA CCGGCGGTGC ATCGCAGCCT
CCCAAGGCGC GCGAACTGAC CTCCGAAGAC GACGCTCCCA AACTGCACAA AATCCTGGCT
GATGCCGGGC TTGGCTCTCG CCGCGACATG GAAGACCTGA TCCTGCAAGG GCGCGTCTCC
GTGAATGGCC TGCCGGCTCA TATCGGTCAA CGCATTCTCG CGACCGACCA GGTGCGCGTG
AACGGCAAGC TGATCCAGCG CAAGTTGCCG AACAAGCCGC CGCGCGTGCT GCTGTATCAC
AAGCCGTCGG GTGAAATCGT CAGCCAGTCC GATCCGGAAG GTCGTCCGAC GGTGTTCGAC
GCGTTGCCGC GCATGAAGAC CGGCAAGTGG GTCGCCGTCG GCCGCCTCGA CTTCAATACC
GAGGGCCTGC TGATTTTCAC GACCTCCGGC GATATCGCCA ACCGGTTTAT GCACCCGCGC
TATGGTGTTG AACGTGAATA TGCGGTGCGT ACGCTGGGCG AATTGGCTGA GACCGACCGC
CAGAAGCTGC TGCACGGTAT CCCGCTCCAG GACGGCGAGG CCAACTTCCT GCGCTGCGTC
GACGGCGGCG GCGAGGGTGT CAACCACTGG TACCACGTGG CCCTGACCGA AGGCCGGAAC
CGTGAAGTCC GACGTATGTT CGAGGCGGTC AATCTGACCG TGTCGCGCCT GATCCGTACG
CGCTATGGCA GCTTCGTGCT GCCGCGTGGC CTCAAGCGCG GCCGCTGGCA GGAGGTGTCG
GCAGAGGACG TGCGTACGCT GATGGGCACG CTGGGCATGA AGGTGCCGAC GGCGAGTTCT
GGCGGCGGCC AAGATCGCCA GGGCAACCGT CGCCGTGGGC CCGCGCCGGT ACTAATGGGC
CCGATGTCGT CCGGTTTTGC TGGGGAAGCG AACTTCCAGT CACGCGGTAT GGGCATCGAG
AACGGGAATC GCGCGCAACC CGCGCAGCGC CGTCCGTCCA GCCCGCGTCA GCCGGATCCG
ATGCAGACGT CCATGGGCTA CATCAATGTG GGAGGCCCAA CCACGCTCAC AGCGCGGACT
CGTATGGGCG ACCGTGCGAA CGGCCGTGGC GGTGCGGGGA CGGGTGGTGG CATGCGTGAT
GGCAATCGCA TACCCGGCAA CAAGCGCCCC GGAAAGAGCG CTGGCGGCAT GCCGAACGGC
AACAAGGCGC CACGCGGTGG TGGCAAACGC GGCGGTAAGC GTTAA
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| Protein sequence | MPADADAQPP RQDGGDGTEA TPRRKGLRRG LRNLVASRRQ QQDGRPEGEA ADAGGADAGQ
PAQPRKTRAP RARKPKEAAG EPAVVAAEGA APAEQAPAEN QGERRGPRGR FGKNRRRPGE
GQPLERAERN DRVEGAGGKN TGGRGKSQNR NGKPQGKAGG ANQNRGGKGL KGGKGSEDVF
QYVISGAYDS EADTGGASQP PKARELTSED DAPKLHKILA DAGLGSRRDM EDLILQGRVS
VNGLPAHIGQ RILATDQVRV NGKLIQRKLP NKPPRVLLYH KPSGEIVSQS DPEGRPTVFD
ALPRMKTGKW VAVGRLDFNT EGLLIFTTSG DIANRFMHPR YGVEREYAVR TLGELAETDR
QKLLHGIPLQ DGEANFLRCV DGGGEGVNHW YHVALTEGRN REVRRMFEAV NLTVSRLIRT
RYGSFVLPRG LKRGRWQEVS AEDVRTLMGT LGMKVPTASS GGGQDRQGNR RRGPAPVLMG
PMSSGFAGEA NFQSRGMGIE NGNRAQPAQR RPSSPRQPDP MQTSMGYINV GGPTTLTART
RMGDRANGRG GAGTGGGMRD GNRIPGNKRP GKSAGGMPNG NKAPRGGGKR GGKR
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