Gene Rpic12D_1172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1172 
Symbol 
ID8018816 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1242884 
End bp1243879 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content62% 
IMG OID644829954 
Productcytochrome d1 heme region 
Protein accessionYP_002981136 
Protein GI241662776 
COG category[S] Function unknown 
COG ID[COG3391] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02276] 40-residue YVTN family beta-propeller repeat 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.912749 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTCCT CGCGCGCCTC GTTTGCCCCC CGTTGGTTCT CCACGCTGGT CCTGTCGGCC 
GCTGCACTCC TGGCAGCGCA TGCGGCGCGT GCCGAAGTCG TCACCGTGCT CAATTCGGGC
GACGCAAGCG TCTCTTTGAT CGACAAGGAC ACCCGCAAGG TGCTCGAGAC GTTCCCGATC
GGCAAAGAGC CGCATCACCT GATCGCCACG CCCGACGAAA AGTCGTTGAT CGTCGCGAAC
GCCGTCGGCA ACGATCTGGT GTTCCTCGAC CCTGTCACGG GCAAGATCCA GCAGCGCGTG
CCGCACATTG ACGATCCGTA TCAGATTGGC TTTTCGCCTG ACCAGAAGTG GTTTCTGACC
ACGGGCAACC GTCTAGACCG CATCGATATT TATCGCTGGG ACGGCCACGC CCTGACCATC
GCCAAACAGA TTCCGGCGGC CAAGACGCCC AGCCACATTG CGTTTACCGC CGACAGCAAG
ATCGCGTTCG TCACCGTGCA GGATTCCAAC GAGGTGATGG CCATCGACCT GCCCACGCAG
AACGTGATGT GGCGCATGAC GATTGGTTCC GCGCCGGCCG GCGTGTGGGT GACGACTGAC
CAGAAATACC TGTTGGTGGG CATGACCGGC GCCGATTACG TCGAAGTGAT CGACTGGCAC
ACCCGCACCA GCGTCAAGCG CATCCCGACC GGCAAGGGCG CGCACAACTT CCGTGCGCTG
GGCGACAAGC GCCACCTGTT CCTGTCGAAC CGCGTGTCGG GCACGATCAG CATCATCGAT
CAGCAAACGC TGACCAAGGT GGGCGACATC ACCGGCCTCC CGCCTGGCCC TGACGATATG
GAATTGACCG CCGACGGCAA GCAGCTGTGG GTGACCTGCC GCTGGGCCAA GCGCGTGGCG
ATTGTCGACG TGGCAAGCCG CAAGGTGGTG GAAGAGATCA AGGTTGGGCG CTCGCCGCAC
GGTATTTACT TCCGCACGCG CGCTCCGCTG ATTTGA
 
Protein sequence
MSSSRASFAP RWFSTLVLSA AALLAAHAAR AEVVTVLNSG DASVSLIDKD TRKVLETFPI 
GKEPHHLIAT PDEKSLIVAN AVGNDLVFLD PVTGKIQQRV PHIDDPYQIG FSPDQKWFLT
TGNRLDRIDI YRWDGHALTI AKQIPAAKTP SHIAFTADSK IAFVTVQDSN EVMAIDLPTQ
NVMWRMTIGS APAGVWVTTD QKYLLVGMTG ADYVEVIDWH TRTSVKRIPT GKGAHNFRAL
GDKRHLFLSN RVSGTISIID QQTLTKVGDI TGLPPGPDDM ELTADGKQLW VTCRWAKRVA
IVDVASRKVV EEIKVGRSPH GIYFRTRAPL I