| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1168 |
|---|
| Symbol | |
|---|
| ID | 8018812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1236086 |
|---|
| End bp | 1236772 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644829950 |
|---|
| Product | ribose-5-phosphate isomerase A |
|---|
| Protein accession | YP_002981132 |
|---|
| Protein GI | 241662772 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0120] Ribose 5-phosphate isomerase |
|---|
| TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00449603 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAGG ATGAACTGAA GGCGTTGGTG GCACAGGCCG CCGCAGACTA CGTATTGGCC
AACGTGCCCG AGGGCGCCGT GCTGGGTGTC GGCACCGGCT CGACGGCCAA CCTGTTCATC
GACGCGATGG CGCCGCACAA GGCGCGGTTC GCCGGCGCGG TGTCCAGCTC GGAGGCGTCG
ACTCGCCGCC TGCAGGGCCA CGGCTTCACG GTGCTCGATT TGAATGAGGT CGATACTATT
CCCGTGTACG TGGATGGCGC CGACGAGATC GACGCTTCCG GCGCCATGAT CAAGGGCGGC
GGCGGTGCGC TCACGCGTGA AAAGATTGTT GCCTCGGTGG CCAACGTGTT CGTTTGCATC
GCTGACGGCA GCAAGCTCGT TGAGACGATG GGTGCTTTCC CGTTGCCGGT GGAAGTGGTG
CCGATGGCGC GCGCCGCCGT GGCCCGCCAA CTGGCTGCGC TGGGCGGTCA GCCGCGCCTG
CGCATGACCA AGGAGGGCCA GATCTACAAG ACCGATAACG GCAACGTGAT TCTCGACGTG
ACCGGCCTGC GCATTGCCGA TCCGAAGGGC CTGGAATCGG TGGTCAACGA GATTCCGGGC
GTGGTGACGG TCGGCCTGTT TGCCAAGCGC GGCGCCAATG TGCTGCTGCT GGGGACCGAA
GCGGGCGTGC AGCGTCGCGA TTTCTGA
|
|---|
| Protein sequence | MTQDELKALV AQAAADYVLA NVPEGAVLGV GTGSTANLFI DAMAPHKARF AGAVSSSEAS
TRRLQGHGFT VLDLNEVDTI PVYVDGADEI DASGAMIKGG GGALTREKIV ASVANVFVCI
ADGSKLVETM GAFPLPVEVV PMARAAVARQ LAALGGQPRL RMTKEGQIYK TDNGNVILDV
TGLRIADPKG LESVVNEIPG VVTVGLFAKR GANVLLLGTE AGVQRRDF
|
|---|
| |