| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1164 |
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| Symbol | |
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| ID | 8018808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 1230867 |
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| End bp | 1233413 |
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| Gene Length | 2547 bp |
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| Protein Length | 848 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644829946 |
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| Product | ribonuclease R |
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| Protein accession | YP_002981128 |
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| Protein GI | 241662768 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.284134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGCGCA CGTCGGGGTC TCCGCTGTCT GCCACCGATA TTGCCAAGGC GCTGTCGGTC
ACGCGCAAGG AGCATGACGG CTTTATCAAG CGTCTGACCG CCATGGAGCG GGATGGTCAG
ATCGAACTCA ACCGCAAGGG GCATTACGAA CTGGCGCACC AGCCCAATTT CATCGAAGGC
CGCGTCATTG GCCATCGCGA TGGCTTCGGC TTTTTTGTAC GCGATGACGG CGAGCCCGAT
ATCTTCCTGC CCGAACGGGA GATGCAGAAG GCCATGCACG GCGACCGCGC CCTGGTGCGC
ACCGTCGGCT ATGATCGCCG GGGGCGTTCG GAAGGGCAGA TCGTCGAGAT CCTGCAGCGG
GCCAACAAGC GCGTCATCGG GAGGTTGCTG TCGGAAAGCG GCACGCTCGT CGTGGCACCG
GAAGACAAGC GCCTGGGCCG CGACATCCTG ATCGCGCCGA AGGGGCAGGG CAAGGCCAAG
GTTGGCCAAG TGGTGAGCGT TGAGATCCTG GAATATCCGG ACCGCTACGT GCAACCGATT
GGCCGCGTGG TGGAGGTGCT GGGTGAGATT GACGACCCCG GCATGGAGAT CGAAATCGCC
GTGCGCAAGT ACGGCGTGCC GCACGAGTTT TCCGAGCCGA CACAGCGAGA AGCTGAGGCG
CTGCCCGACG TCGTTCGCGA TGCCGATTTG GCGGGGCGCA TCGACTTGCG CGACGTACCG
TTGGTCACCA TCGACGGCGA AGACGCGCGC GACTTCGATG ACGCCGTCTA CGCCGAGCCC
GTCAAGATCG GCCGCACCAA GGGCTGGCGC CTGATCGTGG CGATTGCCGA TGTGTCGCAC
TACGTGCGCC CGGGGCATCC CCTCGATGCA GACGCCATTG ATCGAGCGAC TTCGGTCTAT
TTTCCGCGCC GCGTGATCCC GATGCTGCCG GAGAAGCTCT CCAACGGTTT GTGCTCGTTG
AACCCAGAAG TGGACCGCCT GTGCATGGTC TGCGATGCGG TGATCACGGC CAAGGGCGAG
ATCAAGGCCT ATCAGTTCTA CCCAGCGGTG ATGCACTCGA AGGCGCGTCT GACCTACAAC
GAGGTCTGGG CGATCCTGTC CAATGTGAAG GGCCCGGAGG CTGCCAAGCG CGCGCTGCTG
GTGCCGCATC TGCAGGACCT GTACGAGCTG TATCAGACGC TGCTCAAGGC GCGCCGCGAG
CGTGGCGCGA TCGACTTCGA CACCACCGAG ACGTATATCG TCTGCAACGC CCAGGGCAAG
ATCGAGCAGA TCCTGCCGCG CACCCGCAAC GATGCACACA GGCTGATCGA AGAGTGCATG
CTGACGGCCA ATGTCTGCGC GGCCGAGATG CTGGAGAAGT ACAAGCACCC GGCGCTGTAC
CGCGTCCATG CAGGTCCGAC TGAGGAAAAG CTGCAGGCGC TGCGCGCCTT CCTGAAAACC
AGCGGCTTGA CGCTGGGCGG TGGCGACAAG CCGCAGGCCG CCGATTACGC CGAACTGATG
GAAAAGGTGG CCGCCCGTCC TGATGCACCG ATGCTGCAGA CCATGTTGCT GCGCTCGATG
CAGCAGGCGG TCTACAGCCC GGACAACATC GGTCACTTTG GCCTGGCGTA TCCGGCGTAT
GCGCACTTCA CGAGCCCGAT CCGCCGCTAC CCCGATTTGC TGGTGCATCG CTCCATCAAG
GCGATTCTGC ATCGCACGCG TTATGTGCCG GCGCTGGCAC CGGGCGTGCA GTTGAACAGC
GCGCTATCGC CCAAGGCGCG TCGTCTGCAG GCTGAAGCCG AGAAAGGCGT GCCGGCGGCG
GTTGTCAACA AGGCGAAGGT CGAAGCGATC TGGCATGAGC TAGGCGTGCA TTGCTCGGCC
AACGAGCGTC GCGCGGACGA AGCCTCGCGC GACGTCGAGG CCTGGCTCAA GTGCTATTTC
ATGCGCGACA AGCTCGGCAA CGAGTTCTCG GGCACCGTCA GCGCGGTTAC GTCGTTCGGG
ATCTTCGTGC AACTCGACGA GCTGTACGTG GAAGGTCTGG TACACGTGAC CGAGCTGGGC
AGCGATTACT TCCAATACGA CGAAGCGCGC AACGAGCTGC GCGGAGAGCG TACGGGCATC
CGTTATCGCC TGACCGACCG CGTGCGCGTG CAGTTGCTGC GCGTCGATCT GGATGCCCGG
AAGATGGATT TCCGTCTGAT CCAGGAGCCG TCGACCAAGG CGTTGCGCCC GGCTAAGGTG
ACGGGCGCGC CAGAAGCGAC GGCCGCGCGT CAGCCTGCCG GGGCGACGCC GGCGCCGCCG
GTTGGACGCA AGAAGCCGCG CCAGTTGGCC GCATTGCTGG GCGGTACGGC CAAGCCAGAG
GAGTCGTTCG ACGAGACGCT CGATCGCGTT ATCGAAGAGC AGCCGGTGTT CGAGCCGGGT
AGCCGTGCAC TGCCCCCGGG CCATGCCCAC GCCAAGCCTG CGCGCAAGAA GCAGACGGCG
CGTGGTACCA AGCCCAAGGG TGGCGCCAAG ACCGCTGCGC CGCGCAAGGT CGCAGGCAAG
GCCCCGCGCA AGACGAAGGG GCGTTAA
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| Protein sequence | MLRTSGSPLS ATDIAKALSV TRKEHDGFIK RLTAMERDGQ IELNRKGHYE LAHQPNFIEG
RVIGHRDGFG FFVRDDGEPD IFLPEREMQK AMHGDRALVR TVGYDRRGRS EGQIVEILQR
ANKRVIGRLL SESGTLVVAP EDKRLGRDIL IAPKGQGKAK VGQVVSVEIL EYPDRYVQPI
GRVVEVLGEI DDPGMEIEIA VRKYGVPHEF SEPTQREAEA LPDVVRDADL AGRIDLRDVP
LVTIDGEDAR DFDDAVYAEP VKIGRTKGWR LIVAIADVSH YVRPGHPLDA DAIDRATSVY
FPRRVIPMLP EKLSNGLCSL NPEVDRLCMV CDAVITAKGE IKAYQFYPAV MHSKARLTYN
EVWAILSNVK GPEAAKRALL VPHLQDLYEL YQTLLKARRE RGAIDFDTTE TYIVCNAQGK
IEQILPRTRN DAHRLIEECM LTANVCAAEM LEKYKHPALY RVHAGPTEEK LQALRAFLKT
SGLTLGGGDK PQAADYAELM EKVAARPDAP MLQTMLLRSM QQAVYSPDNI GHFGLAYPAY
AHFTSPIRRY PDLLVHRSIK AILHRTRYVP ALAPGVQLNS ALSPKARRLQ AEAEKGVPAA
VVNKAKVEAI WHELGVHCSA NERRADEASR DVEAWLKCYF MRDKLGNEFS GTVSAVTSFG
IFVQLDELYV EGLVHVTELG SDYFQYDEAR NELRGERTGI RYRLTDRVRV QLLRVDLDAR
KMDFRLIQEP STKALRPAKV TGAPEATAAR QPAGATPAPP VGRKKPRQLA ALLGGTAKPE
ESFDETLDRV IEEQPVFEPG SRALPPGHAH AKPARKKQTA RGTKPKGGAK TAAPRKVAGK
APRKTKGR
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