Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1005 |
Symbol | |
ID | 8018640 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 1056500 |
End bp | 1058179 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644829786 |
Product | Peptidoglycan-binding LysM |
Protein accession | YP_002980976 |
Protein GI | 241662616 |
COG category | [S] Function unknown |
COG ID | [COG4254] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0784845 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGAAGC AAGCTGACGC AATCTGGGGT GGTTTGATTG GGCGCGCCGC GTTTGTCGGC GCGTTCGTTC TTTTTGGCGG CGTGTGGCAG GCGGCGATCG CTCAGCCTTC CGGCGCTGAT GGTGGCGATT TCGTCTACCG CGTGCAGCAG GGCGACACGC TGATCAACCT CTCTGAACGT TACATGGACA GCGTCGAAGG CTGGCGCCTG CTGCAGCGGC GCAACCATGT GGCCGATCCG TATCGGTTGA AGCCCGGCTC GCTCCTCCGG ATTCCGTTCG ATCGCATTCC GGTCGTGCCA GCAACGGCGC AGGTCGTGTT TGCACGTGAC GCAACCACCG GCGGCAAGCC CCTGCAGACT GGCACGAAGC TCGCAGAAGA TGCGCAGATC GACACCGGCG ACAAAGGCGC CGTGACGCTG GCCTTTGACG ACGGCACACG CGTGACGGTG CCACCGGGCA GCCACGTTGC GCTGTCGCGT GTGCGGGCGT TTGCGCGCGC CGGGTTGATC GATGTGCGCG TGCACGTGAA GAAGGGCGAA GCGGAATCCA ACGTCGCGCC CAAGAAGAGC GGTGTGGGCC GTTACGAGAT TTCCACGCCA GCGCTGGTGA CGGGCGTGCG AGGTACGCGT TTCCGCGTGC AGGCCAGCGA AGCGGGTTCG ACGAGTTCCG TGCTGGAAGG TGAGGTTGCC ACAAGCGCCG GTCGTCAGAG GCAAGCGGTC AAGGCTGGCT TTGGCGTGGT GGCATCGGCG GGACACCTCA AGCGTGCCGC GCTGCCGGCC CCGCCCAAGC TCGGCGCCAT TCCCGAACTT GTGCAGACGC CGTGCCTGCG CGCGACGTGG CAGCCGGTGA AGGGTGCGGT CGGATATCGC GCTGCCGTGG CGCGGGATGC GGCGCTGACC GAACTCAGTG CCTATCAATC AAGCAAGACC CCGGCGGCAA CGCTCTGCGG CGATGAGGAC GGCGACTACA CGCTCGTCGT GCAGAGCGTC GACGCGCTTG GACTGACCAG TGAATCGGCC ACGCGGCCGT TCACTGTGCG GCTCCATCCG GAAGCGCCGT ACACGATCCA GCCGGGTAGC GATCGGACCT ACCGCAGCGG GGACGTGGCA TTTGCATGGG CTGTCGTGTC CGATGCTGGT AGCTATGACC TGGAAGTGGC GGGCACCGAG AGCTTTGCCT CGCCGGCCGT TCAGCAGCAT GGCGAGGACG TGCGTCTGAC CAGGCCGTTG ACGGCTGGCA CATGGTGGTG GCGTGTGCGC TCGGTGGCAG CGGACGGCAA AACCGGCCCG TGGAGCGATG CGCTTCGTTT TCGCGTGCTC GACATTCCGC TCGATGCCGT ACCGACAGCC GAAGTGGAAG CGAGCGATGA CGGCAAGCTG CATGCCCACT GGTCGGCGTT GTCGCCCGAA CTGGCGGCAT CTGGCGCGCG CACGCGTGTG CAATTGGCGG GCGACACAAG CTTCGCCAAA CCCATCGCCG ACATCGTGAG CGACGGCAAC GAGGCCACCA TTCCGAGGCC GCCGTCCGGC GTGTATTACA TCCGCACCGG CGTCGACTTG GGCGATGCGG CATCGGTGGT CTACGCCAAG CCGCAGCGCA TTGACGTCGG TGCCTTCGTC GGCGATTCCG CGCGCACCCC GGTGCAGAGC GGCGGCGGCA ATCTCCTCCT CAATGACTGA
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Protein sequence | MVKQADAIWG GLIGRAAFVG AFVLFGGVWQ AAIAQPSGAD GGDFVYRVQQ GDTLINLSER YMDSVEGWRL LQRRNHVADP YRLKPGSLLR IPFDRIPVVP ATAQVVFARD ATTGGKPLQT GTKLAEDAQI DTGDKGAVTL AFDDGTRVTV PPGSHVALSR VRAFARAGLI DVRVHVKKGE AESNVAPKKS GVGRYEISTP ALVTGVRGTR FRVQASEAGS TSSVLEGEVA TSAGRQRQAV KAGFGVVASA GHLKRAALPA PPKLGAIPEL VQTPCLRATW QPVKGAVGYR AAVARDAALT ELSAYQSSKT PAATLCGDED GDYTLVVQSV DALGLTSESA TRPFTVRLHP EAPYTIQPGS DRTYRSGDVA FAWAVVSDAG SYDLEVAGTE SFASPAVQQH GEDVRLTRPL TAGTWWWRVR SVAADGKTGP WSDALRFRVL DIPLDAVPTA EVEASDDGKL HAHWSALSPE LAASGARTRV QLAGDTSFAK PIADIVSDGN EATIPRPPSG VYYIRTGVDL GDAASVVYAK PQRIDVGAFV GDSARTPVQS GGGNLLLND
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